interlinked-setup

name

interlinked-setup

description

Install, operate, and troubleshoot the Interlinked CLI harness in a repo — install/uninstall agent hooks, connect runners (Claude Code, Codex, Copilot CLI, Gemini, Cursor), start/stop/restart the local guard daemon, run `interlinked doctor`, switch server / sync-mode / check-policy, log in, and manage the two-tier `.interlinked/` config. Load when setting up Interlinked, when `interlinked doctor` reports problems, when the guard daemon is down or stale, when hooks are not firing, or when configuring or disabling Interlinked.

interlinked-setup — install, operate & troubleshoot the harness

Interlinked is a local, offline-first guard layer for AI coding agents. Everything lives under <repo>/.interlinked/, and a local daemon ("the harness", a Unix-socket server) evaluates every agent tool call. This skill covers turning it on, keeping the daemon healthy, configuring it, and turning it off. The remote server is optional — hooks, guard, and activity capture work with zero network.

Load this when

• Installing Interlinked or connecting a runner (Claude Code / Codex / Copilot CLI / Gemini / Cursor).
• interlinked doctor reports failures, or hooks are not firing / not capturing events.
• The guard daemon is down, stale, or tool calls are being blocked with a "daemon unreachable" reason.
• Changing the server URL, sync mode, or check-policy/operational tier.
• Disabling or fully removing Interlinked.

Mental model

• Per-cwd, offline-first. All state is <cwd>/.interlinked/. Two-tier config: config.json (committed, shared) + config.local.json (gitignored, personal).
• A daemon does the work. harness start runs a background Unix-socket server. When it is up you get the full check set; when it is down the hook falls back to a small inline subset and fails closed on the dangerous stuff (destructive commands, package installs, line-cap, merge conflicts).
• The server is optional. Auth / sync only matter for server-backed coordination (see interlinked-coordination). Skip it entirely for local-only use.

Turning it on

Command	What it does	When to use
interlinked enable	Full setup: writes .interlinked/ config, installs per-client hooks, updates .gitignore, installs statusline (Claude/Copilot), installs every bundled Interlinked skill, auto-starts the daemon. Idempotent; re-running clears any stand-down.	The normal way to turn Interlinked on.
interlinked setup	Runs enable, then login if no token (skips login on localhost / when a token is present).	One-shot bootstrap with server auth.
interlinked init	Interactive/auto onboarding wizard (--yes for non-interactive).	Guided first-run.
interlinked install-hooks	Adapter path: writes only hook entries + installer-manifest.json (no full config scaffold).	Precise, manifest-tracked hook install.

Key enable flags: --server <url> · --agent <name> · --clients <list> (claude,copilot,gemini,codex,cursor) · --sync-mode <realtime|local|manual> · --data-dir <path> · --structure <mode> · --dry-run. install-hooks uses different vocabulary: --runner <claude-code,copilot-cli,cursor,gemini-cli,codex> · --scope <user|project|local> · --mode <balanced|strict|lenient>.

interlinked enable --agent my-bot                 # detects clients, starts daemon
interlinked enable --clients claude --dry-run      # preview without writing
interlinked install-hooks --runner claude-code --scope project

Client detection = presence of the config directory (.claude/, .codex/, …), not the binary. Codex automatically detects skill changes; if an active session does not, restart it. Copilot needs /skills reload to pick up skill changes.

Operating the daemon

Command	Purpose
interlinked harness start [--verbose] [--json]	Start the daemon (background). Reaps orphans first and auto-rebuilds stale dist/, so a cold start can take a few seconds.
interlinked harness stop	SIGTERM the daemon.
interlinked harness restart	Stop + fresh start; the only way to pick up config/mode changes. Note: clears per-session trajectory state.
interlinked harness status [--json]	Running/PID, socket, RSS, mode, orphan count, build staleness.
interlinked daemons [--cleanup]	List all per-session daemons; --cleanup purges dead-PID records.
interlinked harness reap [--force] [--all]	List (default) or kill orphan daemons.

interlinked harness status --json      # is it up? which mode?
interlinked harness restart            # after editing config / changing mode

Diagnosing problems

interlinked doctor is the first stop. It runs local + system + server checks and exits non-zero if any check fails. --fix repairs common drift (regenerates a drifted hook script, safely refreshes Interlinked-owned skill copies, strips malformed permission rules, migrates legacy config).

interlinked doctor            # diagnose
interlinked doctor --fix      # auto-repair what it safely can
interlinked context --json    # show the effective merged config
interlinked env               # list supported env vars + current values

What "healthy" looks like in doctor: config dir + both config files present, hook script present, per-client "Hooks installed", and Harness server: Running (PID …) (vs "Not running — inline fallback"). A missing token on a non-localhost server is a fail; on localhost it is only a warn (dev mode allows unauthenticated).

Dev loop after editing the CLI source: interlinked reload rebuilds the CLI in its own checkout, refreshes this repo's hooks and deployed skills, and restarts the daemon only if something the daemon executes changed.

Config & environment

• .interlinked/config.json (committed): server_url, default_project, mode (operational tier), skip_paths, pii_patterns, nested harness feature flags.
• .interlinked/config.local.json (gitignored): access_token, agent_name, workspace_id, sync_mode, active_server + servers map, guard_mode, data_dir.
• Env overrides (win over both files): INTERLINKED_SERVER_URL, INTERLINKED_ACCESS_TOKEN (alias INTERLINKED_TOKEN), INTERLINKED_AGENT_NAME, INTERLINKED_WORKSPACE_ID, INTERLINKED_SYNC_MODE, INTERLINKED_HOME (relocates the whole config dir), INTERLINKED_DATA_DIR, INTERLINKED_CLIENTS (non-interactive bootstrap only).

Two different mode commands — do not conflate them:

• interlinked mode <balanced|strict|lenient> → per-check policy preset → check-policy.json.
• interlinked harness mode <budget|quality|ci> → operational timeout tier → config.json mode + regenerates the hook. Requires harness restart to take effect.

Auth & server (optional)

interlinked login --server https://your-server.dev   # OAuth PKCE (opens browser)
interlinked login --token "$INTERLINKED_TOKEN"        # CI / headless
interlinked attach --agent my-bot --auto              # link identity + workspace
interlinked logout [--all]

• localhost/127.0.0.1 = dev mode → auth skipped (setup/init skip login for local servers).
• Token resolution: CLI token in config.local.json → auto-refresh → Claude Code credential fallback (~/.claude/.credentials.json).
• Sync modes: realtime (default; per-event post + session-end batch), manual (per-event only), local (no server posts at all).

Turning it off

Command	Effect
interlinked disable [--reason <t>] [--until <dur>] [--team]	Non-destructive stand-down: records a marker + stops the daemon. Hooks and config stay. Re-arm with interlinked enable.
interlinked disable --uninstall [--keep-config]	Destructive teardown: removes hooks + the installed skills and deletes the .interlinked/ config dir — pass --keep-config to keep the config.
interlinked reset --force	Nuclear: delete the entire .interlinked/ dir and strip hook entries. Irreversible; --force required.
interlinked uninstall-hooks	Remove only what install-hooks recorded in its manifest.

A live daemon ignores the stand-down marker. If disable reports the daemon is still running, run interlinked harness stop — the project stays guarded until the daemon dies.

Gotchas

• disable is non-destructive by default now — bare disable just stands down; use --uninstall (or reset --force) for real teardown.
• clean defaults to dry-run; reset requires --force.
• Two install paths, non-interchangeable uninstall. uninstall-hooks only cleans an install-hooks-style install; use disable --uninstall / reset to clean an enable install.
• Claude Code merge-up dedup: enable refuses to install Claude hooks when an ancestor .claude/settings.json already has them (would double-fire) — run enable from that ancestor.
• Gemini is a compatibility lane, not the Antigravity adapter. Consumer Gemini CLI service ended in June 2026, while enterprise and paid API-key Gemini CLI use remain supported. The current gemini client installs Gemini CLI hooks/skills; do not treat it as Antigravity.
• reload needs a source checkout — it rebuilds the CLI checkout the running binary resolves to (typically a ~/.local/bin symlink), not the current repo.
• --json support is per-command; unknown flags error. doctor takes only --fix/--json.

Related skills

• interlinked-harness — what the guard blocks and how to respond when a tool call is refused.
• interlinked-observability — inspect the activity the hooks capture (status, activity, logs).
• interlinked-coordination — the optional server-backed side (tasks, messages, workspaces).