vr-pipeline

name	vr-pipeline
description	Executes the full research pipeline sequentially from brainstorming to paper writing. Passes results from each stage to the next.
user-invocable	true
disable-model-invocation	true
argument-hint	["research-topic"]

Full Research Pipeline

Takes a research topic as input and executes the full pipeline from brainstorming to paper writing and self-review.

Input

$ARGUMENTS - Research topic (e.g., "Analysis of in-context learning mechanisms in LLMs")

Pipeline Stages

Important: After completing each stage, share the results with the user and receive feedback before proceeding to the next stage. Do not advance to the next stage without user confirmation.

Stage 1: Brainstorm

Run /vr-brainstorm $ARGUMENTS.

• Generate research ideas and prioritize them
• Checkpoint: Show the list of ideas to the user and let them choose which idea to pursue

Stage 2: Literature Review

Run /vr-literature-review on the selected idea.

• Systematically survey related prior work
• Analyze research gaps and confirm the positioning of our study
• Checkpoint: Have the user review the prior work analysis results

Stage 3: Experiment Plan

Run /vr-experiment-plan based on the prior work analysis.

• Define experiment variables, metrics, and conditions
• Generate config.yaml
• Checkpoint: Have the user review the experiment plan

Stage 4: Run Experiment

Run /vr-run-experiment <experiment-dir>.

• Write and execute experiment code
• Save results
• Checkpoint: Share the experiment results summary with the user

Stage 5: Make Figures

Run /vr-make-figures <experiment-dir>.

• Visualize results and generate figures
• Checkpoint: Show figures to the user and accept revision requests

Stage 6: Write Paper

Run /vr-write-paper <experiment-dir>.

• Write the paper
• Checkpoint: Share the paper draft with the user

Stage 7: Peer Review

Run /vr-peer-review <paper-dir>.

• Review the paper from the perspective of a top venue reviewer
• Checkpoint: Share the review results with the user and discuss response strategies

Stage 8: Rebuttal & Revision

Run /vr-rebuttal <paper-dir>.

• Write rebuttals to review comments
• If needed, run /vr-ablation-study <experiment-dir> for additional experiments
• Revise the paper
• Checkpoint: Share the final revised version with the user

Progress Tracking

Track the progress of each stage using TodoWrite.

Error Handling

• If any stage fails, stop at that stage and report to the user
• After resolving the issue together with the user, resume from that stage
• If it is necessary to go back to a previous stage, confirm with the user

Notes

• The full pipeline runs as an interactive session with the user
• Accept changes in direction from the user at each checkpoint
• Individual skills can be re-run independently during the pipeline
• /vr-ablation-study is run separately as needed after Stage 7