| name | sponge-toml-input |
| description | 询问 SPONGE 输入文件(mdin.spg.toml)的参数配置时使用。 适用于模拟参数设置、模块配置、输入输出文件指定等。
|
本技能适配 SPONGE 版本号:2.0.0-beta.1
SPONGE 的输入文件为 TOML 格式,默认文件名 mdin.spg.toml,通过 -mdin 参数指定:
SPONGE -mdin mdin.spg.toml
参数内容较多,按模块拆分为独立参考文件。本文件为索引,详细参数见各子文件。
参考文件索引
最小示例
NVT
md_name = "NVT water"
mode = "nvt"
step_limit = 50000
dt = 0.002
cutoff = 8.0
default_in_file_prefix = "WAT"
constrain_mode = "SHAKE"
thermostat = "middle_langevin"
thermostat_tau = 0.1
thermostat_seed = 2026
target_temperature = 300.0
write_information_interval = 1000
NPT
md_name = "NPT water"
mode = "npt"
step_limit = 100000
dt = 0.002
cutoff = 8.0
default_in_file_prefix = "WAT"
constrain_mode = "SHAKE"
thermostat = "middle_langevin"
thermostat_tau = 0.1
thermostat_seed = 2026
target_temperature = 300.0
barostat = "andersen_barostat"
barostat_tau = 0.1
barostat_update_interval = 10
target_pressure = 1.0
write_information_interval = 1000
能量最小化
md_name = "minimization"
mode = "minimization"
step_limit = 1000
default_in_file_prefix = "system"
cutoff = 8.0
write_information_interval = 100