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Use when converting a markdown file produced by Claude into a rendered self-contained HTML document via Quarto. Triggers include requests to render md to html, convert markdown output to a polished document, or produce a shareable HTML from a markdown draft.
Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.
SOC 직업 분류 기준
Use when renaming files, organising media assets, or establishing file naming standards for any project. Applies to images, documents, data files, and outputs. Enforces snake_case with descriptive names, ISO 8601 dates, and zero-padded sequential numbering.
Use when setting up a new R or bioinformatics analysis project, scaffolding directory structures, refactoring messy scripts into clean pipelines, or establishing project conventions. Use when the user says "init", "set up a project", "refactor these scripts", or "create a pipeline". Also use when reviewing whether an existing project follows these conventions.
Use when debugging Quarto (`.qmd`) notebooks chunk-by-chunk via auto-generated tryCatch runners. Triggers when a `quarto render` fails opaquely, when you need to surface every failing chunk in one pass rather than stop at the first error, when iteratively fixing analysis pipelines (Seurat / Bioconductor / GSEA / biomaRt / msigdbr / clusterProfiler), or when adopting an inherited notebook tree whose chunks no longer execute end-to-end. Workflow: parse the qmd → emit a sibling `.R` runner with one `tryCatch` per `{r}` chunk → run it → fix the source qmd → regenerate the runner → repeat until the PASS / FAIL / SKIP summary table is fully green; then commit the qmd fixes and do a final `quarto render`.
Use when creating or editing Quarto (.qmd) documents for scientific analysis. Use when writing analysis pipelines, bioinformatics workflows, or scientific notebooks. Use when structuring code chunks with surrounding documentation, rationale, or methodology descriptions.
Use when writing, editing, or reviewing R code in any project. Use when working with Seurat, Bioconductor, tidyverse, scRNA-seq pipelines, or any R-based analysis. Use when generating code chunks for QMD documents, R scripts, or interactive sessions.
Use when tailoring CVs and cover letters for job applications (academic or industry). Use when parsing job adverts, scaffolding application directories, drafting cover letters, or tailoring CVs to specific roles. Use when the user shares a job advert (text, URL, or PDF) and wants application documents produced.
| name | md-to-html |
| description | Use when converting a markdown file produced by Claude into a rendered self-contained HTML document via Quarto. Triggers include requests to render md to html, convert markdown output to a polished document, or produce a shareable HTML from a markdown draft. |
Convert markdown files into self-contained HTML documents by wrapping them in a Quarto (.qmd) file with the preferred YAML header, then rendering with quarto render.
.md file in the working directorytitle for the YAML header.qmd extension (underscores, not hyphens)---
title: "Document Title Here"
author: "Badran Elshenawy"
date: today
format:
html:
theme: darkly
toc: true
toc-depth: 3
code-fold: show
code-tools: true
embed-resources: true
self-contained: true
title-block-banner: true
---
Before copying content into the .qmd, invoke the md-format skill on the source .md file to catch and fix any formatting issues (e.g. bullet lists missing a blank line before them that would collapse horizontally in the rendered output). Apply all fixes to the source before proceeding.
md-format fixes have been applied)writing-qmd-scientific skill governs QMD authoring conventions; this skill is only for conversion**Date:**, **Presenter:**) need a trailing \ to render on separate lines in Quarto\ at the end of each such line except the lastquarto render filename.qmd
.html file in the same directory_) not hyphens (-) in filenames.md uses hyphens, rename to underscores for both .qmd and .html| Mistake | Fix |
|---|---|
| Consecutive bold lines collapse into one line | Add trailing \ for line breaks |
| Hyphens in filenames | Rename to underscores |
| Altering the writing content | This skill converts only — do not restructure or rephrase |
| Guessing the title | Read the source file and extract the actual title |