Interact with research artifacts running in separate Docker containers via artifact-runner. Execute commands through HTTP API, read files, and verify artifact functionality.
Evaluate research artifacts running in separate Docker containers via artifact-runner. Access artifacts through HTTP API, execute commands, read files, and analyze PDFs.
Interact with artifact containers via HTTP API for paper evaluation tasks. Execute commands, read files, and list directories in remote artifact environments.
Evaluate research artifacts against NDSS badge criteria (Available, Functional, Reproduced) by checking DOI, documentation, exercisability, and reproducibility requirements.
Extract text, tables, and structured information from PDF documents using pdfplumber, PyPDF2, or pdftotext command-line tools.
Calculate protein dihedral angle (phi/psi) from atomic coordinates using the torsion formula. Use when computing backbone dihedral angles from atomic positions or validating protein geometry.
Analyze DNA/RNA/protein sequences: type determination, GC content calculation, reading frame translation, and longest ORF finding. Use when users ask about sequence translation, GC content, open reading frames, or residue counting.
Calculate Nusselt number for forced convection heat transfer. Use when computing dimensionless heat transfer coefficient, or analyzing convection heat transfer performance.