yjianzhu

Run ~/.local/bin/export_xyz to generate one or many knot conformations as XYZ files from the local SQLite database ~/.local/share/rust_knot/knots_data.db. Use when Codex needs command construction, batch export loops, or quick troubleshooting for knot id and atom count exports.

Run and troubleshoot rust_knot for XYZ files with the global entrypoint (~/.local/bin/rust_knot and /home/yongjian/.local/share/rust_knot/table_knot_Alexander_polynomial.txt). Use for command construction, flag handling, and output interpretation.