원클릭으로 Manus에서 모든 스킬 실행

dr-cook

Research intelligence suite for academic writing, literature review, and scientific analysis. Use when users need to write papers, draft grants, polish English/Chinese academic text, review manuscripts, find research gaps, check citations, download literature, design experiments, run bioinformatics analysis, or create scientific visualizations. Triggers on: write paper, grant proposal, rebuttal, cover letter, literature review, research gap, citation check, English polish, Chinese polish, translate, peer review, download paper, bioinformatics, data visualization, 写论文, 基金申请, 文献综述, 英文润色, 中文润色, 翻译, 审稿, 下载文献, 生信分析, 实验设计.

Manus에서 실행

개요

설치 명령

npx skills add https://github.com/wen-chen/dr-cook --skill dr-cook

이 명령을 Claude Code에 복사하여 붙여넣어 스킬을 설치하세요

출처

wen-chen/dr-cook

스타6

포크1

업데이트2026년 3월 9일 01:16

SKILL.md

readonly

name	dr-cook
description	Research intelligence suite for academic writing, literature review, and scientific analysis. Use when users need to write papers, draft grants, polish English/Chinese academic text, review manuscripts, find research gaps, check citations, download literature, design experiments, run bioinformatics analysis, or create scientific visualizations. Triggers on: write paper, grant proposal, rebuttal, cover letter, literature review, research gap, citation check, English polish, Chinese polish, translate, peer review, download paper, bioinformatics, data visualization, 写论文, 基金申请, 文献综述, 英文润色, 中文润色, 翻译, 审稿, 下载文献, 生信分析, 实验设计.
version	1.0.0

Dr. Cook — Research Intelligence Suite v1.0.0

On first invocation or /cook help, display:

/cook grant           Grant writing pipeline
/cook submit          Manuscript submission pipeline
/cook review self     Pre-submission self-check
/cook review peer     Generate referee report
/cook pipeline: A → B Custom pipeline
/cook help            Show this menu

Section 1 — Intent Classification

Module	EN triggers	ZH triggers
paper-writer	write paper, draft manuscript, IMRaD	写论文, 稿件起草
grant-writer	grant, proposal, NSFC, funding	基金, 申请书
rebuttal-writer	rebuttal, response to reviewers	回复审稿
cover-letter-writer	cover letter, submission letter	投稿信
literature-reviewer	review literature, summarize papers	文献综述
research-gap-finder	research gap, what's missing	研究空白
citation-checker	check citations, verify references	引用核查
english-polisher	polish English, improve writing	英文润色
chinese-polisher	polish Chinese	中文润色
en-to-zh	translate to Chinese	英译中
zh-to-en	translate to English	中译英
paper-reviewer	review paper, referee report, self-check	审稿, 自查
literature-downloader	download paper, get full text	下载文献
bioinformatics-assistant	bioinformatics, DEG, enrichment	生信, 差异基因
data-visualizer	plot, chart, visualization	作图, 可视化
method-designer	experimental design, protocol	实验设计

Section 2 — Preset Pipelines

Grant pipeline (/cook grant):
  literature-reviewer → research-gap-finder → grant-writer

Submission pipeline (/cook submit):
  paper-writer → citation-checker → english-polisher → cover-letter-writer

Review pipeline (/cook review self):
  paper-reviewer(self) → english-polisher → citation-checker

Review pipeline (/cook review peer):
  paper-reviewer(peer)

Pipeline execution model:

Announce: [Dr. Cook Pipeline: <name> — Step 1 of N] before loading each module
After each module completes: present output, then automatically proceed to next step
If module status: failed: stop and display [Pipeline paused at <module>. Fix issue or type "skip" to continue.]
User may type "skip" to bypass a failed step (carry status: partial forward)
On completion: [Pipeline complete. N modules run.]

Section 3 — Free Composition Syntax

/cook pipeline: module-a → module-b → module-c

Parse by splitting on →. Match each token to a module name in the registry above. Execute sequentially. Parenthetical modes supported: paper-reviewer(self), paper-reviewer(peer).

Section 4 — Sub-skill Loading Mechanism

Match intent → module path: modules/<category>/<module>/SKILL.md
Load the matched SKILL.md via the Read tool
Execute the sub-skill instructions, collect context_output
For pipelines: inject the completed context_output as the starting context for the next module. The next module must treat inherited raw_text, domain, target_journal, language, and parameters.* as already known — do not re-ask for these values.
Layer 3 (Auto-continuation): If a follow-up message references the previous module's output — via pronouns ("it", "this", "the text"), implicit actions ("now translate", "polish it", "check it"), or continuation phrases ("also", "next") — carry forward that context_output without asking the user to re-paste. Do NOT auto-carry if: the user provides new text, issues a new /cook command, or switches topic. When ambiguous, ask: "Should I continue working on [previous module]'s output?"

Module path pattern: modules/<category>/<module-name>/SKILL.md

Categories: writing, literature, language, review, analysis

Section 5 — Error Handling

Module not found: [Dr. Cook] Module "X" not available. / 模块 "X" 暂不可用. Offer assistance using general knowledge.
Ambiguous intent: Present top 2–3 most likely modules; ask user to choose.
Context overflow (4+ modules, approaching token limit): Summarize intermediate context_output before passing forward; alert user.

이 저장소의 다른 Skills

같은 저장소

dr-cookbioinformatics-assistant

wen-chen/dr-cook

Guide users through computational omics analysis pipelines across three tracks: differential expression analysis (DEG), enrichment analysis (GO/KEGG/GSEA), and network pharmacology (target prediction, PPI networks, hub genes). Use when performing bioinformatics analysis, DEG analysis, differential expression, enrichment analysis, GSEA, GO enrichment, KEGG pathway analysis, network pharmacology, protein-protein interaction, PPI network construction, hub gene identification, scRNA-seq, single-cell analysis, bulk RNA-seq, 生信分析, 差异基因, 富集分析, 网络药理学, 靶点预测. Do NOT trigger for: data-visualizer (plotting and figure generation only), method-designer (experimental design and study planning only).

2026-03-096

dr-cookdata-visualizer

wen-chen/dr-cook

Generate publication-quality scientific figures and visualizations for academic manuscripts. Use when creating data visualization, plot, figure, chart, graph, heatmap, volcano plot, boxplot, violin plot, PCA plot, UMAP, survival curve, Kaplan-Meier, forest plot, scientific figure, publication figure, ggplot, matplotlib, R plot, Python plot, enrichment bubble chart, PPI network visualization, network figure, 数据可视化, 画图, 图表, 可视化. Do NOT trigger for: bioinformatics-assistant (analysis pipelines and computational methods), method-designer (experimental design and study planning).

2026-03-096

dr-cookmethod-designer

wen-chen/dr-cook

Guide researchers through experimental design decisions. Use when planning experimental design, study design, method design, CRISPR design, sgRNA design, network pharmacology design, multi-omics design, sample size calculation, power calculation, statistical power, cohort design, knockout design, knockin design, 实验设计, 样本量计算, 统计功效, CRISPR设计, 多组学, 网络药理学设计. Do NOT trigger for: bioinformatics-assistant (data analysis on existing data), data-visualizer (plotting only), paper-writer (Methods section writing only).

2026-03-096

dr-cookchinese-polisher

wen-chen/dr-cook

Polish and refine academic Chinese writing for publication in Chinese-language journals. Use when improving Chinese grammar, vocabulary, sentence fluency, or domain-specific terminology in Chinese manuscripts, abstracts, or grant sections. Triggers on: Chinese polish, Chinese academic writing, 中文润色, 学术中文, 中文写作, 中文修改, 学术写作润色, polish Chinese, improve Chinese writing, academic Chinese, Chinese manuscript. Does NOT trigger on translation tasks: en-to-zh (English to Chinese translation) or zh-to-en (Chinese to English translation).

2026-03-096

dr-cooken-to-zh

wen-chen/dr-cook

Translate English academic text to Chinese. Use when converting English manuscripts, abstracts, or scientific content to Chinese academic writing. Handles TCM terminology mapping, bioinformatics term standardization, and academic Chinese register. Triggers on: translate to Chinese, English to Chinese, 翻译成中文, 英译中, translate to simplified Chinese.

2026-03-096

dr-cookenglish-polisher

wen-chen/dr-cook

Polish and refine academic English writing. Use when improving grammar, word choice, sentence structure, or discipline-specific terminology in English manuscripts, abstracts, or grant sections. Triggers on: polish English, improve writing, refine language, proofread, academic English, 英文润色, 语言修改, 英文修改, 改善英文, 润色.

2026-03-096

출처

wen-chen

wen-chen/dr-cook

GitHub 저장소 열기 Creator 저장소 보기

설치 명령

다운로드

Manus에서 실행

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고등교육 경영학 교원교육 및 도서관직25-1011L4

name	dr-cook
description	Research intelligence suite for academic writing, literature review, and scientific analysis. Use when users need to write papers, draft grants, polish English/Chinese academic text, review manuscripts, find research gaps, check citations, download literature, design experiments, run bioinformatics analysis, or create scientific visualizations. Triggers on: write paper, grant proposal, rebuttal, cover letter, literature review, research gap, citation check, English polish, Chinese polish, translate, peer review, download paper, bioinformatics, data visualization, 写论文, 基金申请, 文献综述, 英文润色, 中文润色, 翻译, 审稿, 下载文献, 生信分析, 实验设计.
version	1.0.0

Dr. Cook — Research Intelligence Suite v1.0.0

On first invocation or /cook help, display:

/cook grant           Grant writing pipeline
/cook submit          Manuscript submission pipeline
/cook review self     Pre-submission self-check
/cook review peer     Generate referee report
/cook pipeline: A → B Custom pipeline
/cook help            Show this menu

Section 1 — Intent Classification

Module	EN triggers	ZH triggers
paper-writer	write paper, draft manuscript, IMRaD	写论文, 稿件起草
grant-writer	grant, proposal, NSFC, funding	基金, 申请书
rebuttal-writer	rebuttal, response to reviewers	回复审稿
cover-letter-writer	cover letter, submission letter	投稿信
literature-reviewer	review literature, summarize papers	文献综述
research-gap-finder	research gap, what's missing	研究空白
citation-checker	check citations, verify references	引用核查
english-polisher	polish English, improve writing	英文润色
chinese-polisher	polish Chinese	中文润色
en-to-zh	translate to Chinese	英译中
zh-to-en	translate to English	中译英
paper-reviewer	review paper, referee report, self-check	审稿, 自查
literature-downloader	download paper, get full text	下载文献
bioinformatics-assistant	bioinformatics, DEG, enrichment	生信, 差异基因
data-visualizer	plot, chart, visualization	作图, 可视化
method-designer	experimental design, protocol	实验设计

Section 2 — Preset Pipelines

Grant pipeline (/cook grant):
  literature-reviewer → research-gap-finder → grant-writer

Submission pipeline (/cook submit):
  paper-writer → citation-checker → english-polisher → cover-letter-writer

Review pipeline (/cook review self):
  paper-reviewer(self) → english-polisher → citation-checker

Review pipeline (/cook review peer):
  paper-reviewer(peer)

Pipeline execution model:

Announce: [Dr. Cook Pipeline: <name> — Step 1 of N] before loading each module
After each module completes: present output, then automatically proceed to next step
If module status: failed: stop and display [Pipeline paused at <module>. Fix issue or type "skip" to continue.]
User may type "skip" to bypass a failed step (carry status: partial forward)
On completion: [Pipeline complete. N modules run.]

Section 3 — Free Composition Syntax

/cook pipeline: module-a → module-b → module-c

Parse by splitting on →. Match each token to a module name in the registry above. Execute sequentially. Parenthetical modes supported: paper-reviewer(self), paper-reviewer(peer).

Section 4 — Sub-skill Loading Mechanism

Match intent → module path: modules/<category>/<module>/SKILL.md
Load the matched SKILL.md via the Read tool
Execute the sub-skill instructions, collect context_output
For pipelines: inject the completed context_output as the starting context for the next module. The next module must treat inherited raw_text, domain, target_journal, language, and parameters.* as already known — do not re-ask for these values.
Layer 3 (Auto-continuation): If a follow-up message references the previous module's output — via pronouns ("it", "this", "the text"), implicit actions ("now translate", "polish it", "check it"), or continuation phrases ("also", "next") — carry forward that context_output without asking the user to re-paste. Do NOT auto-carry if: the user provides new text, issues a new /cook command, or switches topic. When ambiguous, ask: "Should I continue working on [previous module]'s output?"

Module path pattern: modules/<category>/<module-name>/SKILL.md

Categories: writing, literature, language, review, analysis

Section 5 — Error Handling

Module not found: [Dr. Cook] Module "X" not available. / 模块 "X" 暂不可用. Offer assistance using general knowledge.
Ambiguous intent: Present top 2–3 most likely modules; ask user to choose.
Context overflow (4+ modules, approaching token limit): Summarize intermediate context_output before passing forward; alert user.