aiee-cortex

Autonomous personal research loop for the notebook vault. Takes a topic, runs up to 3 rounds of WebSearch + WebFetch, and files sources/concepts/entities/questions/synthesis pages into notebook/wiki/ only. Use when running /notebook-autoresearch.

Compile a raw source in the notebook vault (raw/papers, raw/repos, raw/clippings) into wiki/sources + wiki/entities + wiki/concepts, update indexes, append INGEST line to _log.md, and record hash in raw/.manifest.json. Use when running /notebook-ingest or after /notebook-capture has dropped new raw cards.

Health check for the notebook vault. Runs 9 checks (orphans, dead wikilinks, stale journals, uncompiled raw cards, aging concepts, index drift, missing frontmatter, graduation candidates, append-only log invariants) and writes a dated report to wiki/meta/. Use when running /notebook-lint, auditing notebook health, or deciding which concepts are ready to graduate.