Expert knowledge for installing, configuring, and using MetaboKG — a hybrid semantic + structural metabolic knowledge graph for KEGG pathways and genome-scale metabolic models. Use this skill when the user asks about setting up MetaboKG in a project, building the SQLite or LanceDB knowledge graph, configuring .mcp.json for Claude Code or Kilo Code, configuring .vscode/mcp.json for GitHub Copilot, configuring claude_desktop_config.json for Claude Desktop, configuring Cline MCP settings, using the metabokg CLI (metabokg, metabokg-init, metabokg-info, metabokg-build, metabokg-update, metabokg-enrich, metabokg-analyze, metabokg-analyze-basic, metabokg-viz, metabokg-viz3d, metabokg-mcp, metabokg-query, metabokg-pack, metabokg-simulate, metabokg-snapshot), using the pack / query_pathway / get_compound / get_reaction / find_path / seed_kinetics / simulate_fba / simulate_ode / simulate_whatif MCP tools, querying KEGG pathways, running FBA or ODE simulations, working with CHO or human metabolic models, multi-corpus KG
2026-05-08