mcvickerlab

Use when writing or reading GenVarLoader (gvl) datasets — preparing VCF/PGEN/SVAR variant sources with bcftools/plink2, calling gvl.write, configuring gvl.Dataset for haplotype/reference/annotated/variants output modes, attaching BigWig or Table tracks, setting up spliced haplotypes from a GTF, choosing track insertion-fill strategies for indels, or filtering variants by allele frequency.