tvbo

How TVBO's code generation works — template engines, backend dispatch in tvbo/codegen/, and the contract for adding a new backend.

How TVBO's code generation works — template engines, backend dispatch in tvbo/codegen/, and the contract for adding a new backend.

Ruthless editor who detects and destroys AI-generated slop — the hollow filler phrases, fake enthusiasm, recycled structures, and performative depth that make text instantly recognizable as machine-written. Rewrites content to sound like a human with something to say.

How to run a SimulationExperiment in TVBO — choosing a backend, calling run/plot, and what each optional extra (jax, tvb, pyrates, julia) provides.

How to write Python docstrings in TVBO so that quartodoc renders them correctly in the API site. Google style, markdown body, type info on signature (not in the docstring).

How to specify a Dynamics in TVBO — the YAML and Python forms, parameter / state-variable / equation conventions, and common pitfalls.

How to specify a Dynamics in TVBO — the YAML and Python forms, parameter / state-variable / equation conventions, and common pitfalls.

How to write Python docstrings in TVBO so that quartodoc renders them correctly in the API site. Google style, markdown body, type info on signature (not in the docstring).

How to run a SimulationExperiment in TVBO — choosing a backend, calling run/plot, and what each optional extra (jax, tvb, pyrates, julia) provides.

Rules for git operations in TVBO. The user manages all version control. Use when clarifying what git actions are allowed or when a task involves version control.

Interview the user relentlessly about a plan or design until reaching shared understanding, resolving each branch of the decision tree. Use when user wants to stress-test a plan, get grilled on their design, or mentions "grill me".

How to edit the LinkML schema in schema/*.yaml and why tvbo/datamodel/** is generated and must never be hand-edited.

What TVBO is — the three pillars (LinkML datamodel, ontology, Python package) plus the Odoo platform. Use when working with the tvbo library or deciding whether to reach for it.

How to use the Odoo-based TVBO platform at tvbo.charite.de — retrieve curated knowledge, manage your account, share SimulationExperiments and Studies (public or with API key), and load them back into Python.

pytest marker conventions for backend-tagged tests in TVBO, the slow/julia markers, and how to run the test suite locally.

Behavioral guidelines to reduce common LLM coding mistakes: think before coding, simplicity first, surgical changes, goal-driven execution. Use when the user wants to enforce strict coding discipline or review coding approach.

Rules for git operations in TVBO. The user manages all version control. Use when clarifying what git actions are allowed or when a task involves version control.

Interview the user relentlessly about a plan or design until reaching shared understanding, resolving each branch of the decision tree. Use when user wants to stress-test a plan, get grilled on their design, or mentions "grill me".

How to edit the LinkML schema in schema/*.yaml and why tvbo/datamodel/** is generated and must never be hand-edited.

pytest marker conventions for backend-tagged tests in TVBO, the slow/julia markers, and how to run the test suite locally.

Behavioral guidelines to reduce common LLM coding mistakes: think before coding, simplicity first, surgical changes, goal-driven execution. Use when the user wants to enforce strict coding discipline or review coding approach.

What TVBO is — the three pillars (LinkML datamodel, ontology, Python package) plus the Odoo platform. Use when working with the tvbo library or deciding whether to reach for it.

How to use the Odoo-based TVBO platform at tvbo.charite.de — retrieve curated knowledge, manage your account, share SimulationExperiments and Studies (public or with API key), and load them back into Python.