3D structure of biological molecules
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| name | structural-biology |
| description | 3D structure of biological molecules |
| license | MIT |
| compatibility | opencode |
| metadata | {"audience":"structural biologists, biochemists, researchers","category":"biology"} |
Experimental Methods
# Protein structure hierarchy
structure_levels = {
'primary': 'Linear amino acid sequence',
'secondary': 'Local structural motifs',
'tertiary': '3D folding of single chain',
'quaternary': 'Multi-subunit assembly'
}
# Secondary structure
secondary_elements = {
'alpha_helix': '3.6 residues/turn, i to i+4 H-bond',
'beta_sheet': 'Interstrand H-bonds, parallel or antiparallel',
'turns': 'Reverse direction, often Gly, Pro'
}