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Deep codebase initialization with hierarchical AGENTS.md documentation
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| name | deepinit |
| description | Deep codebase initialization with hierarchical AGENTS.md documentation |
| level | 4 |
Creates comprehensive, hierarchical AGENTS.md documentation across the entire codebase.
AGENTS.md files serve as AI-readable documentation that helps agents understand:
Every AGENTS.md (except root) includes a parent reference tag:
<!-- Parent: ../AGENTS.md -->
This creates a navigable hierarchy:
/AGENTS.md ← Root (no parent tag)
├── src/AGENTS.md ← <!-- Parent: ../AGENTS.md -->
│ ├── src/components/AGENTS.md ← <!-- Parent: ../AGENTS.md -->
│ └── src/utils/AGENTS.md ← <!-- Parent: ../AGENTS.md -->
└── docs/AGENTS.md ← <!-- Parent: ../AGENTS.md -->
<!-- Parent: {relative_path_to_parent}/AGENTS.md -->
<!-- Generated: {timestamp} | Updated: {timestamp} -->
# {Directory Name}
## Purpose
{One-paragraph description of what this directory contains and its role}
## Key Files
{List each significant file with a one-line description}
| File | Description |
|------|-------------|
| `file.ts` | Brief description of purpose |
## Subdirectories
{List each subdirectory with brief purpose}
| Directory | Purpose |
|-----------|---------|
| `subdir/` | What it contains (see `subdir/AGENTS.md`) |
## For AI Agents
### Working In This Directory
{Special instructions for AI agents modifying files here}
### Testing Requirements
{How to test changes in this directory}
### Common Patterns
{Code patterns or conventions used here}
## Dependencies
### Internal
{References to other parts of the codebase this depends on}
### External
{Key external packages/libraries used}
<!-- MANUAL: Any manually added notes below this line are preserved on regeneration -->
Task(subagent_type="explore", model="haiku",
prompt="List all directories recursively. Exclude: node_modules, .git, dist, build, __pycache__, .venv, coverage, .next, .nuxt")
Generate todo items for each directory, organized by depth level:
Level 0: / (root)
Level 1: /src, /docs, /tests
Level 2: /src/components, /src/utils, /docs/api
...
IMPORTANT: Generate parent levels before child levels to ensure parent references are valid.
For each directory:
When AGENTS.md already exists:
<!-- MANUAL --> preserved)After generation, run validation checks:
| Check | How to Verify | Corrective Action |
|---|---|---|
| Parent references resolve | Read each AGENTS.md, check <!-- Parent: --> path exists | Fix path or remove orphan |
| No orphaned AGENTS.md | Compare AGENTS.md locations to directory structure | Delete orphaned files |
| Completeness | List all directories, check for AGENTS.md | Generate missing files |
| Timestamps current | Check <!-- Generated: --> dates | Regenerate outdated files |
Validation script pattern:
# Find all AGENTS.md files
find . -name "AGENTS.md" -type f
# Check parent references
grep -r "<!-- Parent:" --include="AGENTS.md" .
| Task | Agent |
|---|---|
| Directory mapping | explore |
| File analysis | architect |
| Content generation | writer |
| AGENTS.md writes | writer |
When encountering empty or near-empty directories:
| Condition | Action |
|---|---|
| No files, no subdirectories | Skip - do not create AGENTS.md |
| No files, has subdirectories | Create minimal AGENTS.md with subdirectory listing only |
| Has only generated files (*.min.js, *.map) | Skip or minimal AGENTS.md |
| Has only config files | Create AGENTS.md describing configuration purpose |
Example minimal AGENTS.md for directory-only containers:
<!-- Parent: ../AGENTS.md -->
# {Directory Name}
## Purpose
Container directory for organizing related modules.
## Subdirectories
| Directory | Purpose |
|-----------|---------|
| `subdir/` | Description (see `subdir/AGENTS.md`) |
<!-- Generated: 2024-01-15 | Updated: 2024-01-15 -->
# my-project
## Purpose
A web application for managing user tasks with real-time collaboration features.
## Key Files
| File | Description |
|------|-------------|
| `package.json` | Project dependencies and scripts |
| `tsconfig.json` | TypeScript configuration |
| `.env.example` | Environment variable template |
## Subdirectories
| Directory | Purpose |
|-----------|---------|
| `src/` | Application source code (see `src/AGENTS.md`) |
| `docs/` | Documentation (see `docs/AGENTS.md`) |
| `tests/` | Test suites (see `tests/AGENTS.md`) |
## For AI Agents
### Working In This Directory
- Always install dependencies after modifying the project manifest
- Use TypeScript strict mode
- Follow ESLint rules
### Testing Requirements
- Run tests before committing
- Ensure >80% coverage
### Common Patterns
- Use barrel exports (index.ts)
- Prefer functional components
## Dependencies
### External
- React 18.x - UI framework
- TypeScript 5.x - Type safety
- Vite - Build tool
<!-- MANUAL: Custom project notes can be added below -->
<!-- Parent: ../AGENTS.md -->
<!-- Generated: 2024-01-15 | Updated: 2024-01-15 -->
# components
## Purpose
Reusable React components organized by feature and complexity.
## Key Files
| File | Description |
|------|-------------|
| `index.ts` | Barrel export for all components |
| `Button.tsx` | Primary button component |
| `Modal.tsx` | Modal dialog component |
## Subdirectories
| Directory | Purpose |
|-----------|---------|
| `forms/` | Form-related components (see `forms/AGENTS.md`) |
| `layout/` | Layout components (see `layout/AGENTS.md`) |
## For AI Agents
### Working In This Directory
- Each component has its own file
- Use CSS modules for styling
- Export via index.ts
### Testing Requirements
- Unit tests in `__tests__/` subdirectory
- Use React Testing Library
### Common Patterns
- Props interfaces defined above component
- Use forwardRef for DOM-exposing components
## Dependencies
### Internal
- `src/hooks/` - Custom hooks used by components
- `src/utils/` - Utility functions
### External
- `clsx` - Conditional class names
- `lucide-react` - Icons
<!-- MANUAL: -->
When running on an existing codebase with AGENTS.md files:
Based on SOC occupation classification