curation-skills

Run citation-bearing deep research with deep-research-client across OpenAI, Perplexity, Edison/Falcon, Cyberian, and site-specific providers such as OpenScientist. Use when a user asks for research reports, literature reviews, source-backed synthesis, or provider/model trade-off guidance.

Skills for using ROBOT, the OBO ontology command-line toolkit for reasoning, template-based term creation, quality control, format conversion, and ontology manipulation. Use this when working with OWL/OBO ontologies that need automated processing.

Skill to assist with how a GitHub repository is configured with GitHub integrations, including instructions for agents in markdown (AGENTS and CLAUDE), github actions for invoking agents, and specific localization procedures such as defining claude/codex skills, or claude subagents. The skill helps with both technical aspects, and with best practice for guiding agents.

Skills for understanding and applying DOSDP (Dead Simple Ontology Design Patterns) to ensure consistent ontology term creation and maintenance. This skill is about recognizing patterns and ensuring consistency, not using dosdp-tools directly.

Skills and tools for editing OBO format ontologies, including querying terms, checking out/checking in individual terms, and following OBO format conventions. Do not use this if the source for the ontology you are editing is not in obo format (e.g. ofn)

Skills for querying ontologies using the Ontology Access Kit (OAK). This should only be used for complex ontology operations, for basic external ontology searching use the OLS MCP