菜单
Integrate multiple scRNA-seq batches to remove batch effects while preserving biological variation, using Harmony, scVI, Seurat anchors, or fastMNN.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
Load BioMaster as one integrated skill-driven bioinformatics assistant.
BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-batch-integration |
| description | Integrate multiple scRNA-seq batches to remove batch effects while preserving biological variation, using Harmony, scVI, Seurat anchors, or fastMNN. |
| domain | single-cell |
| primary_tool | harmony |
| methods | ["harmony","scvi","scvi-tools","scanpy","seurat","fastmnn","batchelor","scikit-learn"] |
| macro_tags | ["batch-integration","batch-correction","multi-sample","workflow"] |
| micro_tags | ["harmony","scvi","scanvi","seurat","cca","rpca","fastmnn","lisi","silhouette","leiden","umap","pca","normalization","hvg","qc"] |
| source | bioskills-batch-integration |
| status | active |
| enabled | true |
