菜单
Reconstruct cell lineage trees from CRISPR/lentiviral/mitochondrial barcodes and analyze clonal dynamics and fate decisions in single-cell lineage-tracing experiments.
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基于 SOC 职业分类
Load BioMaster as one integrated skill-driven bioinformatics assistant.
BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-lineage-tracing |
| description | Reconstruct cell lineage trees from CRISPR/lentiviral/mitochondrial barcodes and analyze clonal dynamics and fate decisions in single-cell lineage-tracing experiments. |
| domain | single-cell |
| primary_tool | cassiopeia |
| methods | ["cassiopeia","cospar","mito_utils","larry","scanpy"] |
| macro_tags | ["lineage-tracing","phylogenetics","clonal-dynamics","crispr-barcodes"] |
| micro_tags | ["cassiopeia","cospar","mito_utils","larry","greedy-solver","ilp-solver","neighbor-joining","bootstrap","transition-map","fate-probability","clonal-expansion"] |
| source | bioskills-lineage-tracing |
| status | active |
| enabled | true |
