cache-to-knowledge

name	cache_to_knowledge
description	Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
category	bio/literature
version	1
requires_tools	["write_file"]
requires_network	false
user_invocable	true
species	any
modality	literature
stage	utilities
stability	experimental
safety_level	low

Cache to Knowledge

When to use

User or agent has just fetched content (e.g. abstract, gene summary) and wants to save it to the knowledge base for future use.

Inputs

• source: Short label (e.g. pubmed, uniprot).
• id: Identifier (e.g. PMID, UniProt ID).
• content: Markdown or text to save (title, summary, key facts).
• path: Optional; default knowledge/cache/{source}/{id}.md.

Steps

1. Path: Use path knowledge/cache/{source}/{id}.md (sanitize id for filename). If path provided and under knowledge/, use it.

2. Content: Format as Markdown: title, source, id, date (optional), then content. Keep under 50k chars.

3. Write: Use write_file with path under knowledge/ and the composed content.

4. Confirm: Tell user "Cached to knowledge/cache/... . You can retrieve it later via search_knowledge_base."

Output format

• Confirmation and path
• Note that search_knowledge_base will index it (after next index build if applicable)