bioinfo-sdd-tasks-section

name	bioinfo-sdd-tasks-section
description	Create or revise ordered Bioinfo-skills analysis section task lists.
compatibility	Bioinfo-skills section SDD; Linux/Codex
metadata	{"author":"bioinfo-skills","source":"SPEC/bioinfo_native_section_sdd_plan.md"}

Bioinfo SDD Tasks Section

Use this skill when creating or revising tasks.md for a Bioinfo-skills analysis section.

Workflow

1. Confirm plan_review is approved.
2. Convert the approved section spec and plan into ordered implementation and validation tasks.
3. Keep the list dependency-ordered: section contract checks first, then installed-ref and bioinfo_tool context checks, then wrapper/adapter work, then evidence/report tasks and gate updates.
4. Include pack resolution, section validation, wrapper checks, adapter checks, dependency-aware execution tests, evidence recording, and gate updates.
5. Keep tasks bounded to the declared section. Do not add upstream preprocessing or downstream interpretation tasks unless the section contract is revised.
6. Run PYTHONPATH=src python -m bioinfo_sdd validate-section <section_id>.
7. Stop at task_review unless it is already approved.

Task files are review artifacts. The executable source of truth remains section.yml, the pack manifest, wrappers, adapters, and checks.