MediaIngredientMech

Use this skill to manage MediaIngredientMech record identifiers. In MIM the record `identifier` IS the ontology mapping CURIE (CHEBI / FOODON / cas / kgmicrobe.compound / kgmicrobe.ingredient / mesh / NCIT / MICRO / ENVO) for a mapped ingredient, or an `UNMAPPED_NNNN` placeholder for an unmapped one — there is no separate sequential id. Use when adding or importing ingredient records, minting the next `UNMAPPED_NNNN` placeholder, promoting an unmapped record to its resolved CURIE, or reconciling identifier collisions. (Sequential `RepoName:NNNNNN` ids are a sister-repo scheme — see the cross-repo reference.)

Use this skill to deduplicate and merge MediaIngredientMech ingredient records — when two or more records describe the same ingredient (duplicate CHEBI mappings, name variants, or a placeholder plus its resolved record) and must be consolidated into one, preserving synonyms, occurrence statistics, and curation_history. Covers detection strategies, the merge procedure, and post-merge validation.

Use this skill to map MediaIngredientMech growth-media ingredient names to ontology terms (CHEBI for chemicals, FOODON for biologicals, ENVO for environmental) via exact → normalized → fuzzy → manual matching, with chemical normalization (hydrates, formulas, catalog codes) and synonym preservation. Use when curating unmapped ingredients, adding new ones, or validating existing mappings.

Use this skill to quality-check ontology-mapped MediaIngredientMech ingredient records — verify CHEBI/FOODON/ENVO terms exist and labels match (OAK), enrich chemical properties and synonyms (OLS/OWL), and catch dual-identifier, purity-merge, and kg-microbe-dictionary disagreements. Use after a curation batch, before a KG export, or for periodic maintenance. Issues are graded P1 (blocking) → P4 (optional); P3/P4 can be auto-corrected.

Validate that every ontology ID carries its correct ontology LABEL across MIM data inputs, intermediates, and data products (SSSOM/CSV). Uses LinkML schema bindings + linkml-term-validator for YAML data (canonical label) and a shared OAK validator for products (canonical-or-synonym). Run report-then-enforce; triage drift as wrong-label vs wrong-id.

Run Edison Scientific deep research (PaperQA3) for a MediaIngredientMech ingredient record to gather source-backed identity, composition, CAS-RN, and ontology-grounding (CHEBI/FOODON/NCIT) evidence. Captures a full provenance bundle and produces a curation-focused report for a curator to review and apply.

Find gaps between MIM's LinkML schema, its YAML instances, and the code that generates them. Uses linkml-validate (or the strict closed-schema harness ported from CultureMech) as ground truth and reports along three axes (schema / instances / process). Copy-paste runnable.

Use FutureHouse Falcon deep research for source-backed MediaIngredientMech ingredient curation, ontology mapping review, SSSOM predicate decisions, validation, and generated sharing artifacts.

Extract, assign, enrich, and validate functional roles for MediaIngredientMech ingredients (carbon_source, nitrogen_source, buffer, antibiotic, etc.) from synonyms and existing records

Build a single unified ingredient mapping TSV across CultureMech, MediaIngredientMech, and CommunityMech — one row per unique ingredient name with all available identifiers