project-init

name	project-init
description	[Utilities] Use when initializing or re-evaluating portable project context: project-config, project-reference docs, CLAUDE.md, AGENTS.md, universal agent rules, hookless setup. Triggers on: project init, init project, missing project-config, missing project docs, missing CLAUDE.md, missing AGENTS.md.
disable-model-invocation	false

[IMPORTANT] Create complete task plan before shell checks, scans, generators, edits, or skill calls. [IMPORTANT] After config exists, run /scan-all + /workflow-code-to-spec as post-config barrier; do not proceed until both return outcome/blocker/deferral. [IMPORTANT] After setup/review/verification is otherwise done, spawn background /graph-build sub-agent and record outcome.

Quick Summary

Goal: Initialize or re-evaluate all portable project context files through one idempotent route, so any agent — with or without hooks — can discover missing context and reach a verified state with project config, reference docs, root instruction files, and Codex mirrors aligned.

Workflow:

1. Plan Tasks - Before any setup action, create task-tracking entries for every project-init phase and every required final skill call.
2. Assess - Classify folder state and current context-file health.
3. Bootstrap - Create missing config/doc stubs when useful, then route scans/generators.
4. Populate - After project config is initialized/refreshed, start the post-config parallel group: call /scan-all and /workflow-code-to-spec.
5. Spec Finalization - Resolve the mandatory docs/specs gate from /workflow-code-to-spec; only empty/no-content or no-accepted-capability projects may defer with evidence.
6. Review - Run /review-changes, then /why-review as final quality gates after scan/spec completion.
7. Verify - Validate config, root files, docs, mirrors, spec workflow status, and staleness.
8. Background Graph Refresh - After setup/review/verification is otherwise done, spawn a background sub-agent to run /graph-build.
9. Report - List completed actions, skipped actions, and remaining manual steps.

Key Rules:

• MUST ATTENTION run this before ordinary work when required config/docs/root instruction files are missing.
• MUST ATTENTION preserve user-authored CLAUDE.md and AGENTS.md; use smart-merge/update paths, never blind overwrite.
• MUST ATTENTION keep reusable skill text project-neutral; local rules belong in project config/reference docs.
• MUST ATTENTION use configured portability paths from .claude/.ck.json when present.
• MUST ATTENTION before any shell check, scan, generator, or file edit, create a complete task plan covering assessment, setup routes, final skill calls, verification, report, and lessons.
• MUST ATTENTION immediately after /project-config initializes or refreshes config, create and execute a post-config parallel task group with Call /scan-all and Call /workflow-code-to-spec.
• MUST ATTENTION call /scan-all after config initialization for every content-bearing project; skip only empty/no-content projects with recorded evidence.
• MUST ATTENTION invoke /workflow-code-to-spec for every content-bearing project; it may run in parallel with /scan-all after config exists, but do not treat "handoff suggested" as completion.
• MUST ATTENTION end every setup run with final task-plan rows, in order: Call /review-changes, Call /why-review, Spawn background /graph-build sub-agent, after the scan/spec parallel group is resolved.
• MUST ATTENTION run /graph-build as a required final background sub-agent task after setup/review/verification work is otherwise done; do not run this final graph refresh inline in the main context.
• MUST ATTENTION ask the user to run /sync-codex or its standalone node runner when Codex mirrors/root files are missing or stale; do not auto-run this user-invoked-only sync route.

Scope

/project-init is the canonical coordinator for portable setup. It does not replace lower-level skills; it decides which one to run and when:

Concern	Primary route
Project config	/project-config, then post-config parallel group: /scan-all + /workflow-code-to-spec
Project reference docs	/scan-all after config initialization; /docs-init or /scan --target=<key> only for stubs/focused repairs
Root Claude instructions	/claude-md-init
Codex mirror, AGENTS.md, .agents, .codex	Ask the user to run /sync-codex or its standalone node runner
docs/specs Feature Specs + Section 8 TCs	Mandatory /workflow-code-to-spec gate in the post-config parallel group; outcome must resolve before final review/report
Knowledge graph	Final background sub-agent running /graph-build after setup/review/verification is otherwise done

Project-init test matrix — Defines setup states, routing expectations, and regression cases for post-config scan/spec and final graph behavior. MUST ATTENTION read references/use-cases-and-test-cases.md when creating plans, tests, or reviewing changes to this setup.

Phase -1: Required Task Plan

Before Phase 0 shell checks, create a full task-tracking plan. The plan MUST include many small, observable tasks and MUST NOT start execution until these rows exist.

Minimum required task rows:

1. Read project-init instructions and setup reference files.
2. Assess folder classification, config, docs, root files, mirrors, graph, and spec inventory.
3. Run required config setup route (/project-config) or mark skipped with evidence.
4. Create a post-config parallel group with both Call /scan-all and Call /workflow-code-to-spec as sibling tasks.
5. Call /scan-all after config initialization or mark skipped only for empty/no-content evidence.
6. Call /workflow-code-to-spec after config initialization and complete its Step 0 mode/scope route, or record the exact blocking user confirmation needed.
7. Wait at a barrier until both post-config parallel tasks are completed, blocked, or evidence-deferred.
8. Run required root-instruction route (/claude-md-init) or mark skipped with evidence.
9. Resolve Codex mirror route by asking for /sync-codex when required.
10. Call /review-changes after the scan/spec barrier.
11. Call /why-review after /review-changes.
12. Run verification commands.
13. Spawn a background sub-agent task named Spawn background /graph-build sub-agent after setup/review/verification is otherwise done.
14. Record the background /graph-build sub-agent outcome or explicit blocker.
15. Report files changed, routes invoked, scan/spec outcomes, review outcomes, background graph outcome, verification output, and remaining manual actions.
16. Analyze AI mistakes and reusable lessons.

Keep exactly one row in_progress. Mark each row completed immediately after its evidence is recorded.

Phase 0: Assess State

Use shell checks, not memory. Record evidence for every state claim:

node -e "const h=require('./.claude/hooks/lib/session-init-helpers.cjs'); console.log(JSON.stringify({hasProjectContent:h.hasProjectContent(), isGreenfield:h.isGreenfieldProject()}, null, 2))"
node -e "const s=require('./.claude/hooks/lib/session-init-helpers.cjs'); console.log(JSON.stringify(s.checkProjectConfig(), null, 2))"
node -e "const a=require('./.claude/hooks/lib/agent-files-state.cjs'); console.log(JSON.stringify(a.getAgentFileIssues(), null, 2))"

Also check:

• Config path: node -e "console.log(require('./.claude/hooks/lib/project-config-loader.cjs').getConfiguredProjectConfigPath())"
• Docs index path: node -e "console.log(require('./.claude/hooks/lib/project-config-loader.cjs').getConfiguredDocsIndexPath())"
• Feature docs path: node -e "console.log('docs/specs/')"
• Placeholder docs: use isPlaceholderFile() from .claude/hooks/lib/session-init-helpers.cjs.
• Stale docs: use getStaleReferenceDocs() from .claude/hooks/lib/session-init-helpers.cjs.
• Reference-doc canonical-floor drift: node -e "const h=require('./.claude/hooks/lib/session-init-helpers.cjs');const{loadProjectConfig}=require('./.claude/hooks/lib/project-config-loader.cjs');const r=h.normalizeReferenceDocs((loadProjectConfig()||{}).referenceDocs);console.log(JSON.stringify({changed:r.changed,renames:r.renames,added:r.added,removedLegacy:r.removedLegacy},null,2))". changed:true (non-empty renames/added/removedLegacy) means the config drifted below the canonical reference-doc floor (legacy filenames, missing canonical entries, or wrong order) and MUST be repaired in Phase 2 step 1a before the scan/spec barrier.
• Spec inventory: probe the fixed feature docs path: node -e "const p='docs/specs/'; const fs=require('fs'); console.log(JSON.stringify({path:p, exists:fs.existsSync(p)}, null, 2))"

Phase 1: Decide Route

State	Action
Empty folder, no real project content	Do not deep-scan. Create minimal portable context stubs only when the user explicitly requested project initialization; otherwise report that there is no project content yet and continue with generic guidance. Create the post-config parallel tasks but mark /scan-all skipped and /workflow-code-to-spec deferred only with evidence: No project content or accepted capability scope; next trigger is /workflow-idea-to-spec or /greenfield, then /workflow-code-to-spec init-full. Still create final rows for /review-changes and /why-review; mark them skipped only with this evidence-backed deferral.
Greenfield project with manifests/code scaffold	Run /project-config, then start the post-config parallel group. /scan-all may be limited to relevant detected stack/docs. /workflow-code-to-spec runs when product/capability scope or real code exists; otherwise defer with exact missing scope. Still keep /review-changes and /why-review as final task rows.
Existing project, config missing or skeleton	Run /project-config first. Then immediately start the post-config parallel group (/scan-all + /workflow-code-to-spec) before nonessential setup work.
Config populated, reference docs missing/placeholders	Run /scan-all after config initialization. Use /docs-init or targeted /scan --target=<key> only as follow-up repair if /scan-all identifies missing/stub files.
Config present but referenceDocs drifted (legacy filenames, missing canonical entries, or wrong order per the Phase 0 normalize probe)	Run Reference-doc normalization (Phase 2 step 1a) BEFORE the scan/spec barrier: rewrite config.referenceDocs to normalizeReferenceDocs(...).normalized, git mv each renames[] legacy file to its canonical name (or git rm a stale duplicate), migrate downstream textual refs, then let the SessionStart hook / /scan --target=<key> create the docs. Re-run the probe until .

Phase 2: Execute Order

Run phases sequentially except the explicit post-config parallel group. After each phase, re-run Phase 0 checks.

1. Config - /project-config when config is missing, skeleton, invalid, or stale relative to the workspace. 1a. Reference-doc normalization — canonical floor (MANDATORY when Phase 0 probe reports changed:true) - repair reference-doc drift BEFORE the scan/spec barrier so every project converges to the framework floor regardless of starting state (no docs / partial / legacy names / wrong standard):
   • Rewrite config.referenceDocs to normalizeReferenceDocs(config.referenceDocs).normalized (canonical order, legacy names resolved via the alias map, canonical templatePaths preserved, genuine project-specific extras kept). Never delete or rename a canonical entry.
   • For each renames[] {from,to}: git mv docs/project-reference/<from> docs/project-reference/<to> when <to> is absent; if <to> already exists, <from> is a stale duplicate → confirm <to> holds the canonical content, then git rm docs/project-reference/<from>. Migrate every downstream textual reference (docs-index-reference.md, project-structure-reference.md) <from> → <to>, then ask the user to re-run /sync-codex so the regenerated mirrors match.
   • added[] canonical docs missing on disk are created idempotently by the SessionStart session-init-docs.cjs hook (or /scan --target=<key>) from DEFAULT_REFERENCE_DOCS + templatePath; do not hand-fabricate their content.
   • Re-run the Phase 0 normalize probe and proceed only when it reports changed:false with empty renames/added/removedLegacy.
2. Post-config parallel context build (MANDATORY) - after config exists, create sibling tasks Call /scan-all and Call /workflow-code-to-spec; run them in parallel when the environment/tooling supports parallel skill work, otherwise execute both before crossing the barrier.
   • /scan-all: required for content-bearing projects after config initialization. Skip only empty/no-content projects with evidence. Use /docs-init or targeted only as follow-up repair when scan output proves it is needed.

Phase 2.5: Mandatory Spec Workflow Finalization

This phase starts as the Call /workflow-code-to-spec sibling task in the post-config parallel group. It is ALWAYS represented in task tracking and MUST be resolved before /review-changes, /why-review, final verification, and report.

Scenario	Required final task outcome
Empty folder, no product/capability scope	Do not invoke heavy discovery. Mark final task deferred with evidence: No project content/capability source. Report exact next route: /workflow-idea-to-spec or /greenfield, then /workflow-code-to-spec init-full.
Greenfield with manifests but no accepted product scope	Ask for/route to product discovery or greenfield planning first; defer spec authoring until capability scope exists. Do not generate fake Feature Specs from package names alone.
Greenfield with accepted scope or code scaffold	Invoke /workflow-code-to-spec; recommend init-full for the selected bucket/capabilities; complete Step 0 or report the user confirmation blocker.
Existing/grown project, no Feature Specs under docs/specs/	Invoke /workflow-code-to-spec; recommend init-full, require capability grouping (>10 split; 4-10 sub-agents) per that workflow; complete Step 0 or report the user confirmation blocker.
Existing/grown project with Feature Specs	Invoke /workflow-code-to-spec; recommend audit for freshness, or update when active code/requirement changes exist; complete Step 0 or report the user confirmation blocker.

Do not mark /project-init complete while this phase is unresolved. A valid resolution is either: (1) /workflow-code-to-spec invoked and its Step 0/mode route completed, (2) /workflow-code-to-spec invoked and blocked on explicit user confirmation of mode/bucket/capability, or (3) explicit deferral with evidence that the project has no content/capability source yet. A plain recommendation or handoff without invoking /workflow-code-to-spec is NOT a valid resolution.

/scan-all and /workflow-code-to-spec are allowed to run in parallel only after project config exists. The project-init report must include both outcomes and must state whether /workflow-code-to-spec consumed scan evidence directly or paused pending scan output.

Phase 2.6: Mandatory Final Review Skills

After Phase 2.5, always create and execute these final tasks in order:

1. Call /review-changes - run after /workflow-code-to-spec so the setup/spec changes are reviewed from the current diff.
2. Call /why-review - run after /review-changes to validate rationale and avoid closing on unchallenged setup decisions.

If either skill cannot run because the environment lacks the required tool, stop and report the missing tool. Do not silently replace them with a summary.

Phase 3: Hookless Agent Rule

For Codex or any environment without Claude hooks:

• If docs/project-config.json, the docs index, lessons.md, CLAUDE.md, AGENTS.md, or a task-required reference doc is missing or stale, invoke /project-init before ordinary task work.
• If /project-init cannot run because required tools are absent, report the missing tool and the exact lower-level route that remains.
• Do not proceed with project-specific coding from guessed context.

Phase 4: Verification

Minimum verification before declaring setup complete:

node -e "const{validateConfig,formatResult}=require('./.claude/hooks/lib/project-config-schema.cjs');const{getConfiguredProjectConfigPath}=require('./.claude/hooks/lib/project-config-loader.cjs');const c=JSON.parse(require('fs').readFileSync(getConfiguredProjectConfigPath(),'utf-8'));console.log(formatResult(validateConfig(c)))"
node -e "const a=require('./.claude/hooks/lib/agent-files-state.cjs'); console.log(JSON.stringify(a.getAgentFileIssues(), null, 2))"
node .claude/hooks/tests/test-all-hooks.cjs
node .claude/skills/skill-creator/scripts/validate-skills.cjs --path .claude/skills/project-init

Spec workflow verification before declaring setup complete:

• Confirm the task list contains a post-config parallel group with Call /scan-all and Call /workflow-code-to-spec.
• Confirm Call /scan-all ran after /project-config, or was skipped only with empty/no-content evidence.
• Confirm the task list contains Call /review-changes and Call /why-review as the final review skill-call rows after the scan/spec barrier.
• Confirm the /workflow-code-to-spec outcome is one of: init-full, audit, update, blocked on user-confirmed mode/bucket/capability, or an evidence-backed deferral for empty/no-capability projects.
• Confirm /review-changes ran after /workflow-code-to-spec, or stopped with an explicit missing-tool blocker.
• Confirm /why-review ran after /review-changes, or stopped with an explicit missing-tool blocker.
• Confirm Spawn background /graph-build sub-agent ran after setup/review/verification was otherwise done, or stopped with an explicit missing-tool/dependency blocker.
• Confirm the Feature Spec root is the fixed path docs/specs/.
• Confirm the hook-independent Workflow-First Gate (<!-- CK:WORKFLOW-GATE --> block) is present at the TOP of CLAUDE.md and AGENTS.md so routing survives without hooks. If missing, re-run /claude-md-init (CLAUDE.md), then ask the user to run /sync-codex (AGENTS.md mirror).
• For grown projects, confirm large scope is split per /workflow-code-to-spec (>10 capabilities grouped; 4-10 capabilities sub-agented).

If Codex mirrors were changed, run:

node .claude/skills/sync-codex/scripts/run-codex-sync.mjs --only=tests,wf-cycle,sk-proto,residue,sdd

Phase 5: Mandatory Final Background Graph Build

After Phase 4 verification and setup/review work are otherwise done, always execute this final task:

1. Spawn background /graph-build sub-agent - spawn a background sub-agent whose only job is to invoke /graph-build with default auto-detect scope, read its result, and return a concise outcome.

Rules:

• Run this final graph refresh in a sub-agent/background task, not inline in the main context.
• The task is required even if an earlier graph check found .code-graph/graph.db; existing graph presence changes /graph-build from full build to auto-detected update, not a skip.
• Keep the task open until the background sub-agent returns, or record an explicit blocker such as missing Python/dependencies.
• The project-init report must include the background graph task outcome.

Output

Report:

• Folder classification: empty, greenfield, existing, or already initialized.
• Files created/updated/skipped: project config, reference docs, CLAUDE.md, AGENTS.md, mirrors.
• Lower-level skills/scripts invoked.
• Post-config parallel skill calls: /scan-all and /workflow-code-to-spec, each with outcome and evidence.
• Final review skill calls: /review-changes, /why-review, each with outcome and evidence.
• Final background graph call: /graph-build sub-agent outcome, scope/build type, and blocker if any.
• Spec workflow finalization: invoked mode (init-full, audit, update), user-confirmation blocker, or exact deferral reason and next trigger.
• Verification commands and results.
• Remaining manual action, especially any user-confirmed /sync-codex step.

Closing Reminders

IMPORTANT MUST ATTENTION Goal: any agent, with or without hooks, reaches a verified project-context state before project-specific work.

MUST ATTENTION Protocols in force (concise digest of the SYNC/shared blocks this skill carries):

• Critical Thinking: ALWAYS apply critical + sequential thinking; traced proof, confidence >80% to act.
• AI Mistake Prevention: verify generated content against evidence, trace downstream references, verify all affected outputs, re-read after context loss, surface ambiguity.

IMPORTANT MUST ATTENTION use /project-init as the unified missing-context route; lower-level skills remain implementation steps. IMPORTANT MUST ATTENTION before doing anything, create many small task-plan rows covering every setup phase, the post-config parallel group, and the final review skill calls. IMPORTANT MUST ATTENTION after config exists, call /scan-all and /workflow-code-to-spec as a parallel group when possible, then wait for both outcomes. IMPORTANT MUST ATTENTION never finish /project-init without Call /scan-all and Call /workflow-code-to-spec after config initialization, followed by final rows Call /review-changes, Call /why-review, Spawn background /graph-build sub-agent. IMPORTANT MUST ATTENTION final /graph-build runs in a background sub-agent after setup/review/verification is otherwise done; track it to returned outcome or explicit blocker. IMPORTANT MUST ATTENTION for content-bearing projects, invoke /workflow-code-to-spec; do not close on a recommendation/handoff alone. IMPORTANT MUST ATTENTION record explicit blocker for any unavailable required skill/tool; silent skip is not completion. IMPORTANT MUST ATTENTION preserve user-authored root instruction files; do not overwrite project-only content. IMPORTANT MUST ATTENTION rerun Phase 0 after every setup phase because the next route depends on current evidence. IMPORTANT MUST ATTENTION keep reusable setup logic project-neutral; project-specific facts belong in config/reference docs.

Anti-Rationalization:

Evasion	Rebuttal
"Config exists, skip planning"	Create full task plan first; missing-context setup drifts without visible rows.
"Scan-all and spec workflow can be suggested later"	Call both after config and wait at the barrier; handoff is not completion.
"Graph already exists"	Final /graph-build still runs in background; existing graph changes scope to update, not skip.
"Review is enough"	Run /review-changes, /why-review, verification, then final background graph task.

Critical Thinking Mindset — Apply critical thinking, sequential thinking. Every claim needs traced proof, confidence >80% to act. Anti-hallucination: Never present guess as fact — cite sources for every claim, admit uncertainty freely, self-check output for errors, cross-reference independently, stay skeptical of own confidence — certainty without evidence root of all hallucination.

AI Mistake Prevention — Failure modes to avoid on every task:

Re-read files after context changes. Context compaction, resume, or long-running work can make memory stale; verify current files before acting. Verify generated content against source evidence. AI hallucinates APIs, names, claims, and document facts. Check the relevant source before documenting or referencing. Check downstream references before deleting or renaming. Removing an artifact can stale docs, generated mirrors, configs, and callers; map references first. Trace the full impact chain after edits. Changing a definition can miss derived outputs and consumers. Follow the affected chain before declaring done. Verify ALL affected outputs, not just the first. One green check is not all green checks; validate every output surface the change can affect. Assume existing values are intentional — ask WHY before changing. Before changing a constant, limit, flag, wording, or pattern, read nearby context and history. Surface ambiguity before acting — don't pick silently. Multiple valid interpretations require an explicit question or stated assumption with risk. Keep shared guidance role-relevant. Universal guidance must help every receiving skill or agent; code-specific obligations belong only in code-specific protocols.

MUST ATTENTION apply critical + sequential thinking — every claim needs appropriate traced evidence (file:line for repo/code claims; source URL or artifact section for research, product, content, and docs claims); confidence >80% to act, <60% DO NOT recommend. Anti-hallucination: never present guess as fact, admit uncertainty freely, cross-reference independently, stay skeptical of own confidence.

MUST ATTENTION apply AI mistake prevention — verify generated content against evidence, trace downstream references before deleting or renaming, verify all affected outputs, re-read files after context loss, and surface ambiguity before acting.