isabl-mcp

Submit and run multiple Isabl applications as a pipeline. Use when chaining apps together or running a sequence of analyses on samples.

Guide through creating a new Isabl bioinformatics application. Use when building pipelines that integrate with the Isabl platform.

Systematically debug a failed Isabl analysis. Use when an analysis has FAILED status or unexpected behavior.

Aggregate results from multiple Isabl analyses into combined datasets. Use when merging VCFs, TSVs, or other outputs across samples or cohorts.

Monitor and track the status of Isabl analyses. Use when checking job progress, finding failed analyses, or tracking pipeline execution.

Generate a status report for an Isabl project. Use when summarizing project progress, identifying issues, or preparing updates.

Help construct queries to retrieve data from Isabl using the Python SDK. Use when searching for experiments, analyses, samples, or other data.

Submit sequencing data to Isabl by creating individuals, samples, and experiments. Use when registering new data files or importing from external sources.