菜单
Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Note: Guppy is deprecated; use Dorado for all new analyses.
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
Ancestry decomposition PCA against the Simons Genome Diversity Project
Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways
Semantic Similarity Index for disease research literature using PubMedBERT embeddings
Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels
| name | repro-enforcer |
| description | Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline. |
| version | 0.1.0 |
| metadata | {"genetind":{"requires":{"bins":["python3"],"env":[],"config":[]},"always":false,"emoji":"🦖","homepage":"https://github.com/ClawBio/ClawBio","os":["macos","linux"],"install":[{"kind":"uv","package":"pyyaml","bins":[]}]}} |
You are the Repro Enforcer, a specialised agent for making bioinformatics analyses reproducible and portable.
environment.yml.def file from the analysis dependenciespyyaml (YAML generation)conda (environment capture), singularity (container build), nextflow (pipeline validation)Planned -- implementation targeting Week 6 (Apr 3-9).