verify-ai-docs

name	verify-ai-docs
description	Full AI optimization stack health check for any codebase. 9-tier scorecard: AI docs, dependency graph, Obsidian memory vault, Codex memory, project quality gates, and skills ecosystem. Works for any language (C++, Rust, TypeScript, Python, Go, Java, etc.) and any project structure — no hardcoded paths. Auto-fixes stale summaries, stale graph, missing hooks. Prints install guide for new contributors when stack is missing. Use when: "verify ai docs", "check ai stack", "is everything up to date?", "ai health check", "verify optimization stack", "check my ai setup". Proactively suggest before a major push, when a new contributor joins, or at the start of a long coding session.
origin	generic

AI Optimization Stack — Full Health Check

Follow every step in order. Use real tool calls — never assume file state. Project root is detected automatically from git. Config is loaded from tools/ai_docs/config.sh (machine-specific, git-ignored).

---

STEP 0 — Load config and detect project

PROJECT_ROOT=$(git rev-parse --show-toplevel)
echo "Project root: $PROJECT_ROOT"

[ -f "$PROJECT_ROOT/tools/ai_docs/config.sh" ] \
  && source "$PROJECT_ROOT/tools/ai_docs/config.sh" \
  && echo "Config loaded" \
  || echo "No config.sh (using defaults)"

# Defaults
GRAPHIFY_BIN="${GRAPHIFY_BIN:-graphify}"
OBSIDIAN_VAULT="${OBSIDIAN_VAULT:-$HOME/Documents/Obsidian}"
OBSIDIAN_PROJECT_DIR="${OBSIDIAN_PROJECT_DIR:-$(basename $PROJECT_ROOT)}"
OBSIDIAN_MEMORY_FILE="${OBSIDIAN_MEMORY_FILE:-$OBSIDIAN_PROJECT_DIR/_memory/memory.md}"
OBSIDIAN_LOG_FILE="${OBSIDIAN_LOG_FILE:-LOG.md}"
CLAUDE_MEMORY_ROOT="${CLAUDE_MEMORY_ROOT:-$HOME/.Codex/projects}"
CLAUDE_MEMORY_KEY="${CLAUDE_MEMORY_KEY:-}"
SKILLS_DIR="${SKILLS_DIR:-.Codex/skills}"

Module discovery — modules are identified by the presence of AI_CONTEXT.md. No hardcoded list needed. Run:

find "$PROJECT_ROOT" -name "AI_CONTEXT.md" \
  -not -path "*/.git/*" \
  -not -path "*/node_modules/*" \
  -not -path "*/vendor/*" \
  -not -path "*/__pycache__/*" \
  | sort

This shows all tracked modules. Use this list for Tiers 2 and 3.

---

TIER 1 — Core Scripts

for F in \
  tools/ai_docs/generate_ai_summary.py \
  tools/ai_docs/update_on_edit.py \
  tools/ai_docs/generate_all.py \
  tools/ai_docs/run_hook.sh \
  tools/ai_docs/find_python.sh \
  tools/ai_docs/assemble_context.py; do
  [ -f "$F" ] && echo "EXISTS $(wc -l < $F) $F" || echo "MISSING $F"
done

Thresholds: generate_ai_summary.py ≥ 80 · update_on_edit.py ≥ 50 generate_all.py ≥ 35 · run_hook.sh ≥ 10 · find_python.sh ≥ 20 · assemble_context.py ≥ 80

❌ FAIL on any missing file → skip remaining tiers and print install guide (Step 9).

---

TIER 2 — AI Documentation

2a — Constraint rules doc (optional but recommended)

# Check for a standalone constraint/rules document (any name)
for F in docs/REALTIME_RULES.md docs/RULES.md docs/CONSTRAINTS.md docs/THREADING.md; do
  [ -f "$F" ] && echo "OK $F ($(wc -l < $F) lines)" && break
done

⚠️ WARN if missing — recommended for any project with RT, threading, or domain constraints.

2b — AI_CONTEXT.md coverage (auto-discovered)

# Find all directories with source files
TOTAL_SRC_DIRS=$(find . -not -path "*/.git/*" -not -path "*/node_modules/*" \
  -not -path "*/vendor/*" -not -path "*/build/*" -not -path "*/dist/*" \
  -not -path "*/target/*" -not -path "*/__pycache__/*" \
  \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
     -o -name "*.py" -o -name "*.go" -o -name "*.java" -o -name "*.cs" \) \
  -printf "%h\n" 2>/dev/null | sort -u | wc -l)

# Count directories that have AI_CONTEXT.md
COVERED=$(find . -name "AI_CONTEXT.md" -not -path "*/.git/*" \
  -not -path "*/node_modules/*" | wc -l)

echo "Modules with AI_CONTEXT.md: $COVERED"
echo "Total source directories:   $TOTAL_SRC_DIRS"

# List each tracked module
find . -name "AI_CONTEXT.md" -not -path "*/.git/*" \
  -not -path "*/node_modules/*" -not -path "*/vendor/*" \
  | sort | while read CTX; do
    DIR=$(dirname "$CTX")
    echo "OK: ${DIR#./}"
  done

2c — Cognitive contract coverage (failure modes + hot files)

COVERED=0; TOTAL=0
find . -name "AI_CONTEXT.md" \
  -not -path "*/.git/*" -not -path "*/node_modules/*" -not -path "*/vendor/*" \
  | sort | while read CTX; do
  TOTAL=$((TOTAL+1))
  HAS_FAIL=$(grep -c "^## Common failure modes" "$CTX" 2>/dev/null || echo 0)
  HAS_HOT=$(grep -c "^## Hot files" "$CTX" 2>/dev/null || echo 0)
  DIR="${CTX%/AI_CONTEXT.md}"
  if [ "$HAS_FAIL" -gt 0 ] && [ "$HAS_HOT" -gt 0 ]; then
    echo "OK ${DIR#./}"
    COVERED=$((COVERED+1))
  else
    MISS=""
    [ "$HAS_FAIL" -eq 0 ] && MISS="${MISS}failure-modes "
    [ "$HAS_HOT" -eq 0 ] && MISS="${MISS}hot-files"
    echo "INCOMPLETE ${DIR#./} (missing: $MISS)"
  fi
done

Each INCOMPLETE = ⚠️ WARN. Template for new sections is in Step 8.

2d — Orphan detection

Source directories with files but no AI_CONTEXT.md:

find . -not -path "*/.git/*" -not -path "*/node_modules/*" \
  -not -path "*/vendor/*" -not -path "*/build/*" -not -path "*/dist/*" \
  -not -path "*/target/*" -not -path "*/__pycache__/*" \
  \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
     -o -name "*.py" -o -name "*.go" -o -name "*.java" \) \
  -printf "%h\n" 2>/dev/null | sort -u | while read D; do
    [ ! -f "$D/AI_CONTEXT.md" ] && echo "ORPHAN: ${D#./}"
  done | head -20

Each orphan = ⚠️ WARN. Print template from Step 8 for each.

---

TIER 3 — AI_SUMMARY.md Freshness (auto-discovered)

find . -name "AI_CONTEXT.md" \
  -not -path "*/.git/*" -not -path "*/node_modules/*" -not -path "*/vendor/*" \
  | sort | while read CTX; do
    DIR=$(dirname "$CTX")
    SUMMARY="$DIR/AI_SUMMARY.md"
    NAME="${DIR#./}"

    if [ ! -f "$SUMMARY" ]; then
      echo "MISSING: $NAME"
    else
      # Check if any source file is newer than AI_SUMMARY.md
      STALE=$(find "$DIR" -maxdepth 1 \
        \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
           -o -name "*.tsx" -o -name "*.py" -o -name "*.go" -o -name "*.java" \
           -o -name "*.cs" -o -name "*.swift" -o -name "*.kt" \) \
        -newer "$SUMMARY" 2>/dev/null | head -1)
      [ -n "$STALE" ] \
        && echo "STALE: $NAME ($(basename $STALE) is newer)" \
        || echo "OK: $NAME"
    fi
  done

⚠️ WARN if stale → queued for auto-fix in Step 7.

---

TIER 3b — AI_CONTEXT.md Drift (freshness vs sources)

Detects modules where source files were modified after AI_CONTEXT.md — the most common way documentation becomes misleading without anyone noticing.

find . -name "AI_CONTEXT.md" \
  -not -path "*/.git/*" -not -path "*/node_modules/*" -not -path "*/vendor/*" \
  | sort | while read CTX; do
    DIR=$(dirname "$CTX")
    NAME="${DIR#./}"
    CTX_DATE=$(git log -1 --format="%ci" -- "$CTX" 2>/dev/null)
    if [ -z "$CTX_DATE" ]; then
      echo "UNTRACKED: $NAME (AI_CONTEXT.md not committed yet)"
      continue
    fi
    # Source commits after AI_CONTEXT.md's last commit — excluding doc files
    DRIFT=$(git log --oneline --after="$CTX_DATE" -- "$DIR" \
      | grep -v "AI_CONTEXT\|AI_SUMMARY\|\.md$" | wc -l | tr -d ' ')
    if [ "$DRIFT" -gt 0 ]; then
      echo "STALE: $NAME — $DRIFT source commit(s) after last AI_CONTEXT.md update ($CTX_DATE)"
    else
      echo "OK: $NAME (in sync)"
    fi
  done

Each STALE = ⚠️ WARN — the context doc may no longer accurately describe the module. Action: read recent git diff for that module, then update the relevant section(s) of AI_CONTEXT.md.

---

TIER 4 — Automation Chain (PostToolUse hook)

4a — Hook registered

grep -c "run_hook.sh" .Codex/settings.json 2>/dev/null \
  && echo "HOOK REGISTERED" || echo "HOOK MISSING"

4b — Python detection

PY=$(bash tools/ai_docs/find_python.sh)
[ -n "$PY" ] && "$PY" --version && echo "PYTHON_OK: $PY" || echo "PYTHON_MISSING"

4c — Functional end-to-end test

Pick any source file that exists in a tracked module and simulate an edit event:

# Find any source file inside a tracked module (has AI_CONTEXT.md in parent)
TEST_FILE=$(find . -name "AI_CONTEXT.md" -not -path "*/.git/*" \
  | head -1 | xargs dirname | xargs -I{} find {} -maxdepth 1 \
  \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
     -o -name "*.py" -o -name "*.go" -o -name "*.java" \) 2>/dev/null | head -1)

if [ -n "$TEST_FILE" ]; then
  ABS_TEST="$PROJECT_ROOT/${TEST_FILE#./}"
  echo "Testing with: $ABS_TEST"
  echo "{\"tool_name\":\"Edit\",\"tool_input\":{\"file_path\":\"$ABS_TEST\"}}" \
    | bash tools/ai_docs/run_hook.sh
else
  echo "SKIP — no source file found in tracked module"
fi

✅ PASS if output contains "Updated".

---

TIER 5 — Dependency Graph (graphify or equivalent)

5a — Tool available

"$GRAPHIFY_BIN" --version 2>/dev/null && echo "GRAPHIFY_OK" || \
  (which graphify 2>/dev/null && echo "GRAPHIFY_OK (PATH)" || echo "GRAPHIFY_MISSING")

⚠️ WARN if missing (recommended, not required). Print install note in Step 8.

5b — Graph output exists

[ -f graphify-out/graph.json ] \
  && echo "EXISTS $(du -h graphify-out/graph.json | cut -f1)" \
  || echo "MISSING — run: graphify ."

5c — Graph freshness

NEWEST=$(find . -not -path "*/.git/*" -not -path "*/node_modules/*" \
  -not -path "*/build/*" -not -path "*/dist/*" -not -path "*/target/*" \
  \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
     -o -name "*.py" -o -name "*.go" -o -name "*.java" \) \
  -newer graphify-out/graph.json 2>/dev/null | head -1)
[ -n "$NEWEST" ] \
  && echo "GRAPH STALE ($(basename $NEWEST) is newer)" \
  || echo "GRAPH FRESH"

⚠️ WARN if stale → auto-fix: graphify update .

---

TIER 6 — Obsidian Memory Vault

# Vault root
[ -d "$OBSIDIAN_VAULT" ] \
  && echo "VAULT OK: $OBSIDIAN_VAULT" \
  || echo "VAULT MISSING: $OBSIDIAN_VAULT (set OBSIDIAN_VAULT in config.sh)"

# Project subfolder
[ -d "$OBSIDIAN_VAULT/$OBSIDIAN_PROJECT_DIR" ] \
  && echo "PROJECT DIR OK: $OBSIDIAN_PROJECT_DIR" \
  || echo "PROJECT DIR MISSING: $OBSIDIAN_VAULT/$OBSIDIAN_PROJECT_DIR"

# memory.md
MEM="$OBSIDIAN_VAULT/$OBSIDIAN_MEMORY_FILE"
[ -f "$MEM" ] \
  && echo "MEMORY OK ($(wc -l < $MEM) lines)" \
  || echo "MEMORY MISSING: $MEM"

# LOG.md — global session journal
LOG="$OBSIDIAN_VAULT/$OBSIDIAN_LOG_FILE"
if [ -f "$LOG" ]; then
  RECENT=$(find "$LOG" -mtime -7 2>/dev/null)
  [ -n "$RECENT" ] && echo "LOG RECENT (< 7 days)" || echo "LOG STALE (> 7 days)"
else
  echo "LOG MISSING: $LOG"
fi

[ -f "$OBSIDIAN_VAULT/SCHEMA.md" ] && echo "SCHEMA OK" || echo "SCHEMA MISSING (optional)"

⚠️ WARN if memory missing or log stale. ❌ FAIL only if vault root doesn't exist.

---

TIER 7 — Codex Memory System

# Find memory directory
if [ -n "$CLAUDE_MEMORY_KEY" ]; then
  MEM_DIR="$CLAUDE_MEMORY_ROOT/$CLAUDE_MEMORY_KEY/memory"
else
  MEM_DIR=$(find "$CLAUDE_MEMORY_ROOT" -name "MEMORY.md" 2>/dev/null \
    | head -1 | xargs -I{} dirname {})
fi

[ -d "$MEM_DIR" ] \
  && echo "MEMORY DIR OK: $MEM_DIR" \
  || echo "MEMORY DIR MISSING (set CLAUDE_MEMORY_KEY in config.sh)"

if [ -f "$MEM_DIR/MEMORY.md" ]; then
  LINES=$(wc -l < "$MEM_DIR/MEMORY.md")
  echo "MEMORY.md: $LINES lines"
  [ "$LINES" -gt 200 ] \
    && echo "WARN: > 200 lines — truncation risk, prune old entries" \
    || echo "OK"
fi

TOPIC_COUNT=$(find "$MEM_DIR" -name "*.md" ! -name "MEMORY.md" 2>/dev/null | wc -l)
echo "Topic files: $TOPIC_COUNT"

---

TIER 8 — Project Quality Gates

# Project AI instructions
[ -f AGENTS.md ] \
  && echo "AGENTS.md OK ($(wc -l < AGENTS.md) lines)" \
  || echo "AGENTS.md MISSING — add project-level AI instructions"

# Architecture doc
for F in docs/ARCHITECTURE.md ARCHITECTURE.md; do
  [ -f "$F" ] && echo "ARCHITECTURE OK: $F ($(wc -l < $F) lines)" && break
done

# Decision records
ADR_COUNT=$(find docs/adr docs/decisions -name "*.md" 2>/dev/null \
  | grep -v README | wc -l)
[ "$ADR_COUNT" -gt 0 ] \
  && echo "Decision records: $ADR_COUNT" \
  || echo "No ADRs — consider docs/adr/ for architectural decisions"

# Contributing guide
for F in CONTRIBUTING.md docs/CONTRIBUTING.md; do
  [ -f "$F" ] && echo "CONTRIBUTING OK: $F" && break
done

# Failure patterns knowledge base
for F in docs/KNOWN_FAILURE_PATTERNS.md KNOWN_FAILURE_PATTERNS.md; do
  [ -f "$F" ] \
    && echo "KNOWN_FAILURE_PATTERNS OK: $F ($(wc -l < $F) lines)" \
    && break
done || echo "KNOWN_FAILURE_PATTERNS MISSING — consider creating docs/KNOWN_FAILURE_PATTERNS.md"

---

TIER 9 — Skills Ecosystem

# Project-local skills
echo "=== Local skills (.Codex/skills/) ==="
find "$SKILLS_DIR" -name "SKILL.md" 2>/dev/null | sort | while read S; do
  NAME=$(basename $(dirname "$S"))
  echo "OK: $NAME ($(wc -l < $S) lines)"
done

# Count project skills
COUNT=$(find "$SKILLS_DIR" -name "SKILL.md" 2>/dev/null | wc -l)
echo "Total: $COUNT local skill(s)"

# Check for verify-ai-docs itself
[ -f "$SKILLS_DIR/verify-ai-docs/SKILL.md" ] \
  && echo "verify-ai-docs: PRESENT" \
  || echo "verify-ai-docs: MISSING — copy from ai-native-dev-stack repo"

---

TIER 10 — Cognitive Contract (Failure Modes + Context Assembler)

10a — Failure modes coverage summary

OK=0; TOTAL=0
find . -name "AI_CONTEXT.md" -not -path "*/.git/*" -not -path "*/node_modules/*" \
  | while read CTX; do
  TOTAL=$((TOTAL+1))
  grep -q "^## Common failure modes" "$CTX" && grep -q "^## Hot files" "$CTX" \
    && OK=$((OK+1))
done
echo "Cognitive contract: $OK/$TOTAL modules fully annotated"

10b — KNOWN_FAILURE_PATTERNS.md

for F in docs/KNOWN_FAILURE_PATTERNS.md KNOWN_FAILURE_PATTERNS.md; do
  [ -f "$F" ] && echo "OK ($(wc -l < $F) lines, $(grep -c "^### " $F) patterns)" && break
done || echo "MISSING"

PASS if ≥ 30 lines.

10c — Context assembler functional test

PY=$(bash tools/ai_docs/find_python.sh)
TEST_FILE=$(find . -name "AI_CONTEXT.md" -not -path "*/.git/*" \
  | head -1 | xargs dirname | xargs -I{} find {} -maxdepth 1 \
  \( -name "*.cpp" -o -name "*.h" -o -name "*.rs" -o -name "*.ts" \
     -o -name "*.py" -o -name "*.go" \) 2>/dev/null | head -1)
[ -n "$TEST_FILE" ] \
  && PYTHONIOENCODING=utf-8 "$PY" tools/ai_docs/assemble_context.py "$TEST_FILE" \
       --no-memory --output /tmp/ctx_test_pub.md 2>/dev/null \
  && echo "ASSEMBLER OK ($(wc -l < /tmp/ctx_test_pub.md) lines)" \
  || echo "ASSEMBLER FAIL or no source file found"

---

STEP 5b — Metrics Snapshot (generate_metrics.py)

Generate or refresh docs/METRICS.md — the objective, git-derived measurement of stack health over time. This is the answer to "how do we know if this is working?".

PY=$(bash tools/ai_docs/find_python.sh)
if [ -n "$PY" ]; then
  PYTHONIOENCODING=utf-8 "$PY" tools/ai_docs/generate_metrics.py
  echo ""
  echo "=== Metrics summary ==="
  # Coverage line
  grep "Directories with" docs/METRICS.md 2>/dev/null | head -1
  # KFP line
  grep "KNOWN_FAILURE_PATTERNS" docs/METRICS.md 2>/dev/null | head -1
  # Risk zones
  RISK=$(grep "^- \`" docs/METRICS.md 2>/dev/null | grep "add AI_CONTEXT" | wc -l | tr -d ' ')
  echo "Risk zones (high churn, uncovered): $RISK"
  # Latest trend row
  echo "Latest trend:"
  grep "^| 20" docs/METRICS.md 2>/dev/null | tail -1
else
  echo "SKIP — Python not found"
fi

Key metrics to read from docs/METRICS.md:

• Coverage %: target ≥ 80% of source directories. <50% = DEGRADED.
• KFP pattern count: should grow over time. Stagnant for >30 days = the system isn't being used to capture bugs.
• Stale contexts: target 0. >3 = documentation drift risk.
• Risk zones: high-churn uncovered dirs = where AI errors are most likely. Prioritize these for AI_CONTEXT.md.

---

STEP 6 — Scorecard

Print the full scorecard using results from Tiers 1-10:

━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
  AI OPTIMIZATION STACK — HEALTH SCORECARD
  Project: <ProjectName> · <date>
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

Tier 1  — Core Scripts          [N/6]  results
Tier 2  — AI Documentation      [N/M]  results  ← coverage, orphans, contract
Tier 2e — AGENTS.md & AGENTS.md [N/2]  results  ← cross-tool portability
Tier 3  — AI_SUMMARY Freshness  [N/M]  results
Tier 3b — AI_CONTEXT Drift      [N/M]  results  ← git-based staleness ← NEW
Tier 4  — Automation Chain      [N/3]  results
Tier 5  — Dependency Graph      [N/3]  results
Tier 6  — Obsidian Vault        [N/5]  results
Tier 7  — Codex Memory    [N/3]  results
Tier 8  — Project Quality       [N/5]  results  ← KFP, ADRs, ARCHITECTURE
Tier 9  — Skills Ecosystem      [N/M]  results
Tier 10 — Cognitive Contract    [N/3]  results  ← failure modes · KFP · assembler

Metrics — Coverage / KFP / Risk  [see docs/METRICS.md]  ← NEW
  Coverage: X% (N/M dirs)   KFP: N patterns   Risk zones: N

━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
  SCORE: X/Y  |  PASS: A  WARN: B  FAIL: C
  Status: OPERATIONAL / DEGRADED / BROKEN
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

Status rules:

• OPERATIONAL — 0 FAILs (warnings are OK)
• DEGRADED — FAILs in Tiers 2/3/6/7/8/9 only
• BROKEN — FAIL in Tier 1 (scripts missing) or Tier 4 (Python/hook broken)

---

STEP 7 — Auto-fix (execute automatically)

Fix stale AI_SUMMARY.md (always)

PY=$(bash tools/ai_docs/find_python.sh)
PYTHONIOENCODING=utf-8 "$PY" tools/ai_docs/generate_all.py

Fix stale dependency graph

"$GRAPHIFY_BIN" update . 2>/dev/null && echo "Graph updated" \
  || echo "graphify not available — skip"

Fix missing PostToolUse hook

If Tier 4a FAILED — add to .Codex/settings.json:

{
  "hooks": {
    "PostToolUse": [{
      "matcher": "Edit|Write",
      "hooks": [{
        "type": "command",
        "command": "bash /absolute/path/to/tools/ai_docs/run_hook.sh"
      }]
    }]
  }
}

Use the absolute path to run_hook.sh in your project.

---

STEP 8 — Report-only actions

Missing AI_CONTEXT.md — print this template for each orphan

# AI_CONTEXT — <ModuleName>

## Purpose
<2-3 sentences describing what this module does and why it's a separate module.>

## Thread model (if applicable)
| Function | Thread | Notes |
|---|---|---|
| `myFunction()` | Main thread | Synchronous, blocking OK |
| `processCallback()` | Worker / RT thread | No alloc, no blocking |

## Constraints
- <What must always be true in this module>
- <External invariant this module depends on>

## Forbidden
- <What must never happen in this module's code>

## Common patterns
```language
// Typical usage
module.doThing(arg);

See also

• [Link to related module or ADR]

→ Fill in and save as `<module_dir>/AI_CONTEXT.md`, then re-run `/verify-ai-docs`.

### Missing graphify

Install: see https://github.com/graphify/graphify Then run: graphify . (from project root, once — takes 30-60s) Update: graphify update . (fast, AST-only, run after large refactors)

---

## STEP 9 — New contributor install guide

Print ONLY when Tier 1 had FAILs (fresh machine):

AI-NATIVE DEV STACK — INSTALL GUIDE

Repository: https://github.com/Rwanbt/ai-native-dev-stack

PREREQUISITES

• Git repository (required)
• Python 3.8+ (required for AI_SUMMARY generation)
• Codex (required for /verify-ai-docs skill)
• graphify (recommended for dependency graph)
• Obsidian (recommended for memory vault)

QUICK SETUP

1. Scripts are already committed to the project repo. git pull (gets tools/ai_docs/ + .Codex/skills/)

2. Register the PostToolUse hook: Edit .Codex/settings.json and add the run_hook.sh command. See templates/settings_hook_example.json for the exact format.

3. Set up machine config: cp tools/ai_docs/config.sh.example tools/ai_docs/config.sh Edit config.sh: set OBSIDIAN_VAULT, GRAPHIFY_BIN, CLAUDE_MEMORY_KEY

4. Generate all AI_SUMMARY.md files: python tools/ai_docs/generate_all.py

5. Verify: /verify-ai-docs → should show OPERATIONAL

---

## Final summary

- All PASS: `AI optimization stack fully operational. No action needed.`
- WARNs only: `Stack operational. N auto-fixes applied. N warnings remain.`
- DEGRADED: `Stack degraded — see above for missing docs/memory/quality items.`
- BROKEN: `Stack broken — Tier 1 or 4 failures require manual intervention.`