菜单
Phase 2: Adaptive statistical analysis. Claude diagnoses data structure (groups, timepoints, outcome types), proposes a customized analysis plan, discusses with user, and executes in dependency order. Each method outputs figure + table + README with publication-grade standards.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
Phase 1: Data preparation and exploratory data analysis. Clean raw data, handle missing values, detect outliers, create derived variables, generate data quality report, and produce cleaned.csv.
Topic mining from clinical data tables (CSV/XLSX). Analyze variable structure, distribution patterns, missing data, and correlations; combine with PubMed literature search to identify research gaps; generate 3-5 structured candidate paper topics with feasibility scores. No statistical analysis or manuscript writing involved.
Read workspace state and auto-route to the appropriate clinpub command. With natural language input (e.g., '/clinpub:do 我想改清洁逻辑'), routes by intent. With no arguments, shows current state summary and suggests next commands.
Phase 0: Initialize or import a clinical research project. Detect existing artifacts and import into clinpub structure, or start fresh. Discuss study design, variables, analysis methods with user; generate project_config.yml, directory structure, and .clinpub/ artifacts.
Phase milestone management. Review completed phase deliverables, verify success criteria, record decisions, and gate progression to next phase. Generates MILESTONE.md and updates ROADMAP.md.
Modify completed analysis outputs. Clarifies modification scope (figure style, statistical method, variables), executes changes, verifies outputs, and records history in PLAN.md. Can be invoked from any phase. Triggers: modify figures, change analysis method, adjust chart style, replace variables.
| name | clinpub-analysis |
| description | Phase 2: Adaptive statistical analysis. Claude diagnoses data structure (groups, timepoints, outcome types), proposes a customized analysis plan, discusses with user, and executes in dependency order. Each method outputs figure + table + README with publication-grade standards. |
Phase 2: Statistical analysis. Execute selected analysis methods in wave order, each producing publication-grade figures (≥300 DPI), formatted tables, and method documentation.
A shared figure configuration script (_figure_config.R) is generated at the start of Phase 2 to ensure all method figures share consistent theme, color palette, and DPI. Every method R script must source("04_Outputs/_figure_config.R") after library() calls.
Wave 1 → Wave 2 → Wave 3 → Wave 4 with dependency tracking. Only execute user-confirmed methods.
pipeline/workflows/analysis.mdpipeline/references/analysis_methods.md, r_patterns.mdExecute the analysis workflow from pipeline/workflows/analysis.md end-to-end.
_figure_config.R) exists in 04_Outputs/ and is sourced by all method R scripts_figure_config.R