u9401066

Validate that written content accurately reflects source materials. LOAD THIS SKILL WHEN: User says "驗證", "validate", "檢查準確性", "核對" | after writing notes/reports | ensuring content accuracy. CAPABILITIES: Source-target comparison, citation verification, fact checking, consistency check.

Filter, validate and organize literature search results. LOAD THIS SKILL WHEN: User has search results and needs to "過濾", "篩選", "filter", "選擇文獻" | reviewing search results | narrowing down papers. CAPABILITIES: Relevance filtering, duplicate detection, inclusion/exclusion criteria, Zotero integration.

Complete literature retrieval capability combining search and filter skills. LOAD THIS SKILL WHEN: User needs "文獻檢索", "找文獻", "retrieve literature", "系統性搜尋" | starting systematic review | comprehensive literature search. CAPABILITIES: Multi-database search, MeSH expansion, quality filtering, PRISMA-compliant workflow. COMPOSITE SKILL: Combines literature-search + literature-filter.

Search and retrieve academic literature from multiple databases. LOAD THIS SKILL WHEN: User says "搜尋文獻", "search literature", "find papers", "PubMed", "學術搜尋" | needs to find research articles | starting literature review. CAPABILITIES: PubMed search, MeSH term expansion, citation metrics, batch retrieval.

Write structured notes from source materials following academic standards. LOAD THIS SKILL WHEN: User says "寫筆記", "write notes", "摘要", "summarize", "整理重點" | has source content to summarize | creating reading notes. CAPABILITIES: Structured summaries, key point extraction, citation formatting, template-based writing.

Read and extract content from PDF files using multiple methods. LOAD THIS SKILL WHEN: User says "讀取 PDF", "read PDF", "打開論文", "看這篇" | has PDF file path | needs to extract text from PDF. CAPABILITIES: PDF to markdown conversion, text extraction, figure detection, citation extraction.

Complete report writing capability combining reading, note-taking, validation, and formatting. LOAD THIS SKILL WHEN: User needs "寫報告", "write report", "整理成報告", "產出文件" | has source materials to summarize | creating academic document. CAPABILITIES: PDF reading, structured notes, content validation, format checking. COMPOSITE SKILL: Combines pdf-reader + note-writer + content-validator + report-formatter.

Auto-update CHANGELOG.md following Keep a Changelog format. LOAD THIS SKILL WHEN: User mentions "changelog", "version", "release notes" | says "更新日誌", "版本", "變更記錄" | before releases | after completing features or fixes. CAPABILITIES: Categorize changes (Added/Changed/Fixed/Removed), determine version numbers, Keep a Changelog format.

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates, and MCP tool count sync. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

Codex harness for PubMed Search MCP. Triggers: pubmed search, literature search, unified_search, pipeline, fulltext, release checklist, Codex.

Pipeline persistence — save, load, and reuse structured search plans. Triggers: pipeline, 管道, search plan, 搜尋計畫, 重複搜尋, saved search, 排程, schedule, workflow, DAG

Complete reference for all 46 PubMed Search MCP tools. Triggers: 工具列表, all tools, 完整功能, tool reference, 有哪些工具

Agent-guided PICO clinical question search using parse_pico handoff and unified_search. Triggers: PICO, 臨床問題, A比B好嗎, treatment comparison, clinical question, 療效比較

Auto-update CHANGELOG.md following Keep a Changelog format. Triggers: CL, changelog, 變更, 版本, version, 更新日誌, whatsnew.

Proactively detect and execute code refactoring to maintain DDD architecture and code quality. Triggers: RF, refactor, 重構, 拆分, split, 模組化, modularize, 太長, cleanup.

Comprehensive code review checking quality, security, and best practices. Triggers: CR, review, 審查, 檢查, check, 看一下, PR, code review, 品質.

全自動論文撰寫 + 閉環自我改進系統。 LOAD THIS SKILL WHEN: 全自動寫論文、auto write、自動撰寫、幫我寫完整篇、autopilot、從頭到尾、一鍵寫論文 CAPABILITIES: 編排所有研究 Skills + 3 層 Audit Hooks + Meta-Learning 自我改進

論文草稿的撰寫、讀取、引用管理。 LOAD THIS SKILL WHEN: 寫草稿、draft、撰寫、Introduction、Methods、Results、Discussion、引用、citation、字數、patch、編輯草稿 CAPABILITIES: draft_action(action="write"|"section"|"read"|"list"|"insert_citation"|"sync_references"|"count_words"|"available_citations"|"patch")

Word 匯出技能 - 將草稿匯出為符合期刊格式的 Word 文件。 LOAD THIS SKILL WHEN: 匯出 Word、export、template、word count、轉成 docx

系統性文獻搜尋、篩選、下載、整理。觸發：文獻回顧、找論文、搜尋文獻、systematic review、literature search、PubMed、找文章、搜paper、review、reference、citation、引用、參考文獻、背景調查、background。

發展研究概念並驗證創新性。觸發：concept、發展概念、研究概念、novelty、創新點、補充概念、幫我補充、擴展概念、加強、驗證失敗、novelty不夠、怎麼改。

提交前編排器 + Paper-Aware Pre-Commit Hooks。 LOAD THIS SKILL WHEN: commit、提交、推送、做完了、收工 CAPABILITIES: 記憶同步、文檔更新、Paper 品質把關、Git 操作

研究專案的建立、切換、設定管理。 LOAD THIS SKILL WHEN: 新專案、切換專案、專案設定、paper type、start exploration、convert exploration CAPABILITIES: project_action, workspace_state_action

學術辯論與觀點比較框架。 LOAD THIS SKILL WHEN: debate、辯論、pro/con、正反方、devil's advocate、挑戰假設、counter-argument、反駁、compare viewpoints、比較觀點、challenge、質疑 CAPABILITIES: 純指令技能，不需要專屬 MCP tool。利用 LLM 推理能力 + 現有 tools (read_draft, search_local_references) 完成分析。

Proactively detect and execute code refactoring to maintain DDD architecture and code quality. Use when code is too complex, violates DRY principle, or needs restructuring. Triggers: RF, refactor, 重構, 拆分, split, 模組化, modularize, 太長, cleanup, 簡化, simplify, 整理程式碼.

Systematic debugging workflow using hypothesis-test-verify cycle to find and fix issues efficiently. Use when encountering errors, bugs, unexpected behavior, or test failures. Triggers: DEBUG, 除錯, bug, 找問題, 為什麼不work, 出錯了, error, fix bug, 壞了, broken, 不動, 故障, exception, traceback, 報錯.

Pre-commit orchestration workflow ensuring Memory Bank sync, README/CHANGELOG/ROADMAP updates before git commit. Use when preparing to commit code changes or push to repository. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送, 準備上程式碼.

Complete data analysis workflow including EDA, Table One, descriptive statistics, and correlation analysis using MCP AutoML tools. Use when analyzing CSV data, exploring datasets, generating summary statistics, or creating publication-ready Table One reports. Triggers: 分析資料, analyze data, EDA, 探索資料, 資料分析, describe data, 資料探索, 基本統計, summary statistics, Table One, 敘述統計, 看看資料, 快速分析, quick analysis, 分析一下, 幫我分析.

Data cleaning and preprocessing workflow including handling missing values, encoding categorical variables, filtering rows, removing columns, and checking multicollinearity (VIF). Use when preparing data for analysis, cleaning messy datasets, or transforming variables. Triggers: 資料清理, data cleaning, 缺失值, 處理資料, preprocess, missing values, 遺漏值, encoding, 編碼, VIF, multicollinearity, 共線性, filter, 過濾, rename columns.

Machine learning model training workflow using AutoML including data upload, model training, evaluation, and prediction. Use when training classification or regression models, comparing algorithms, or making predictions on new data. Triggers: 訓練模型, train model, ML, 機器學習, AutoML, prediction, 預測, classification, regression, 分類, 迴歸, XGBoost, random forest, neural network, 模型比較.

Generate comprehensive test suites including unit tests, integration tests, E2E tests, and coverage reports. Use when writing tests, improving coverage, or validating functionality. Triggers: TG, test, 測試, 寫測試, coverage, 覆蓋率, pytest, unittest, 驗證, 測試案例, test case.

Intelligently update README.md to reflect code changes, new features, and API updates. Use when adding new features, changing APIs, or syncing documentation with code. Triggers: readme, 說明, 更新說明, update readme, 文檔同步, 更新文檔, documentation, docs.

Deep comprehensive code audit across quality, security, architecture compliance, test coverage, and documentation sync. Triggers: AUDIT, 審計, audit, 全面審查, deep review, 深度審查, 健檢, health check, 程式碼審計, codebase audit, 完整檢查, full check.

Check health, freshness, and consistency of all Skills, copilot-instructions.md, chatmodes, and bylaws. Triggers: SHC, health, 健康檢查, skill check, freshness, 翻新, 過期, stale, 檢查 skill, instruction check, audit skills, 技能檢查.

Structured bug fixing workflow with root cause analysis and regression prevention. Triggers: BF, 修 bug, fix bug, debug, 除錯, 錯誤, error, 問題, issue, 修復, fix, 故障, fault, 異常, exception, 失敗, failure, 不能用, broken, 壞掉.

Auto-update CHANGELOG.md following Keep a Changelog format. Triggers: CL, changelog, 變更, 版本, version, 更新日誌, whatsnew, release notes, 發布說明, 變更紀錄, history, 歷史, 更新紀錄, 新功能, new features, breaking changes.

Proactively detect and execute code refactoring to maintain DDD architecture and code quality. Triggers: RF, refactor, 重構, 拆分, split, 模組化, modularize, 太長, cleanup, 整理, clean, 優化, optimize, extract, 提取, simplify, 簡化, 複雜度, complexity, 重組, reorganize, 改善, improve.

Complete code review workflow for PR/MR with multiple reviewers and automated checks. Triggers: PRW, 審查流程, review workflow, PR review, MR review, pull request, merge request, 程式碼審查流程, full review, 完整審查.

Comprehensive code review checking quality, security, and best practices. Triggers: CR, review, 審查, 檢查, check, 看一下, PR, code review, 品質, inspect, 檢視, 看看, 幫看, lint, quality check, 品質檢查, pull request, merge request, MR, diff, 程式碼審查.

Ensure code follows DDD architecture and DAL separation for both frontend and backend. Triggers: DDD, arch, 架構, 新功能, 新模組, new feature, scaffold, 骨架, domain, layer, 分層, structure, 結構, backend, frontend, React, Vue, Python, TypeScript, 前端, 後端, component, 元件.

Use when brainstorming ideas, stuck on a problem, exploring alternatives, or needing creative input - provides structured creativity methods (SCAMPER, Six Hats, Mind Map), Multi-Agent parallel thinking, and concept collision for unexpected sparks. Don't use for mechanical execution tasks

Auto-update CHANGELOG.md following Keep a Changelog format. Triggers: CL, changelog, 變更, 版本, version, 更新日誌, whatsnew.

Proactively detect and execute code refactoring to maintain DDD architecture and code quality. Triggers: RF, refactor, 重構, 拆分, split, 模組化, modularize, 太長, cleanup.

Comprehensive code review checking quality, security, and best practices. Triggers: CR, review, 審查, 檢查, check, 看一下, PR, code review, 品質.

Ensure code follows DDD architecture and DAL separation principles. Triggers: DDD, arch, 架構, 新功能, 新模組, new feature, scaffold, 骨架, domain.

Auto-check and update key documentation before Git commits to keep docs in sync with code. Triggers: docs, 文檔, 更新文檔, sync docs, release, 發布.

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

Externalize detailed memory to Memory Bank before conversation summarization to prevent context loss. Triggers: CP, checkpoint, save, 存檔, 記一下, 保存, sync memory, dump, 先記著.

Generate comprehensive test suites including static analysis, unit tests, integration tests, E2E tests, and coverage reports. Triggers: TG, test, 測試, 寫測試, coverage, 覆蓋率, pytest, unittest, 驗證.

Codex drawing harness integration. Triggers: 繪圖, draw, figure, chart, plot, mermaid, SVG, Gemini, graph, 生成圖表.

13-Phase Auditable EDA Pipeline orchestration. Use when user wants to explore data, run analysis, or asks about the pipeline. Triggers: EDA, 資料探索, 分析資料, pipeline, 13-phase, analyze, 探索.

13-Phase Auditable EDA Pipeline orchestration. Use when user wants to explore data, run analysis, or asks about the pipeline. Triggers: EDA, 資料探索, 分析資料, pipeline, 13-phase, analyze, 探索.

Phase 10 report assembly and export workflow. Use when user wants to generate, review, or export the EDA report. Triggers: 報告, report, assemble, export, 產出報告, 匯出.

13-Phase Auditable EDA Pipeline orchestration. Use when user wants to explore data, run analysis, or asks about the pipeline. Triggers: EDA, 資料探索, 分析資料, pipeline, 13-phase, analyze, 探索.

Phase 8 report assembly and export workflow. Use when user wants to generate, review, or export the EDA report. Triggers: 報告, report, assemble, export, 產出報告, 匯出.

Data profiling and schema analysis workflow. Use when user wants to understand data structure, quality, distributions. Triggers: profiling, schema, 資料品質, data quality, describe, 看資料, overview, 概況.

Audit and auto-update skills, hooks, instructions, and bylaws to stay in sync with codebase changes. Triggers: self-update, 自主更新, audit skills, 審計技能, update instructions, 更新指令, sync hooks, 同步 hooks.

Assist with Frontend DDD architecture design, component organization, and testing. Triggers: frontend, 前端, react, component, 元件, vitest.

Generate test files for new code including unit, integration, and e2e tests. Triggers: test, 產生測試, generate test, 測試, 寫測試.

Automatically update CHANGELOG.md based on code changes following Keep a Changelog format. Triggers: changelog, 更新 changelog, update changelog, 變更紀錄.

Proactively suggest and execute code refactoring to maintain clean architecture. Triggers: refactor, 重構, 優化程式碼, clean up, 整理程式碼.

Perform code review with DDD architecture compliance check. Triggers: review, 程式碼審查, code review, 審查, CR.

Assist with DDD architecture design and compliance checking. Triggers: DDD, 架構, architecture, 領域設計, domain design.

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

Build or refresh Foam-compatible LLM wikis from Asset-Aware documents, citation bundles, tables, figures, and local Markdown notes using a multi-tool workflow.

Codex workflow skill for building Foam-compatible LLM wikis from Asset-Aware documents, citation bundles, tables, figures, and local Markdown notes.

Auto-update CHANGELOG.md following Keep a Changelog format. Triggers: CL, changelog, 變更, 版本, version, 更新日誌, whatsnew.

Cline harness for this repo (rules + workflows + checks). Triggers: cline harness, full check, release checklist, workflow, 文檔工作流, DFM, citation-ready.

Codex harness for Asset-Aware MCP. Triggers: asset-aware, MCP, PDF, DOCX, DFM, citation-ready, CRAAP, release checklist, VSIX.

Auto-check and update key documentation before Git commits to keep docs in sync with code. Triggers: docs, 文檔, 更新文檔, sync docs, release, 發布.

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

MCP tools for PDF ingestion → extract figures, tables, sections → build knowledge graph. Transforms PDF into queryable assets (images, tables, text) with cross-document RAG. Triggers: PDF, ingest, extract, 圖片, 表格, figure, table, manifest, knowledge graph, 知識圖譜, RAG, 文獻分析.

Build or refresh Foam-compatible LLM wikis from Zotero, PubMed, documents, and local Markdown notes using a multi-tool workflow.

Codex workflow skill for building Foam-compatible LLM wikis from Zotero, PubMed, documents, and local Markdown notes.

Codex harness for PubMed Search MCP. Triggers: pubmed search, literature search, unified_search, pipeline, fulltext, release checklist, Codex.

Codex harness for Zotero Keeper and the bundled VS Code extension. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, vsix, Codex.

Enforce uv-only package management policy. Reject all pip usage in code, docs, CI. Triggers: UV, uv, pip, package, 套件, 安裝, install, 環境, environment, dependency, 依賴.

Cline harness for PubMed Search MCP. Triggers: pubmed search, literature search, unified_search, pipeline, fulltext, release checklist, Cline.

Cline harness for Zotero Keeper and the bundled VS Code extension. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, vsix, Cline.

程式碼/報告生成。觸發詞：生成程式碼, Python 函數, LaTeX, 報告, export。

步進式推導工作流。觸發詞：推導, derive, 組合公式, 建立模型。

公式庫管理。觸發詞：找公式, 列出, 更新公式, 刪除公式, 公式庫。

外部公式搜尋。觸發詞：搜尋公式, Wikidata, BioModels, 物理常數, PK模型, 反應動力學。

快速計算（無需會話）。觸發詞：計算, 簡化, 求解, 微分, 積分, 極限, 級數, 不等式, 機率。

驗證工具組合。觸發詞：驗證, verify, check, 維度, dimension。

Cline harness for this repo (rules + workflows + checks). Triggers: cline harness, full check, release checklist, workflow, 文檔工作流, DFM, citation-ready.

Cline harness for Zotero/PubMed assistant workflows bundled with Pharmacy MCP. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, Cline.

Codex harness for Asset-Aware MCP references bundled with Pharmacy MCP. Triggers: asset-aware, MCP, PDF, DOCX, DFM, citation-ready, CRAAP, release checklist.

Codex harness for Zotero/PubMed assistant workflows bundled with Pharmacy MCP. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, Codex.