nextflow-pipelines-check-completion

Sub-skill of nextflow-pipelines: Check completion (+1).

仓库: vamseeachanta/workspace-hub
最近来源活动: 2026年5月4日 15:05
检测到的 SKILL.md 语言: 英语
星标: 16
分支: 7

安装方式

默认使用会先检查来源的 Prompt；你也可以切换为直接命令，或下载本地副本。

检查来源文件

决定是否安装前，请先阅读 SKILL.md，以及 SkillsMP 当前展示的配套文件。

返回搜索返回安装

name	nextflow-pipelines-check-completion
description	Sub-skill of nextflow-pipelines: Check completion (+1).
version	1.0.0
category	science
type	reference
scripts_exempt	true

Check completion (+1)

Check completion

ls results/multiqc/multiqc_report.html
grep "Pipeline completed successfully" .nextflow.log

Key outputs by pipeline

rnaseq:

results/star_salmon/salmon.merged.gene_counts.tsv - Gene counts
results/star_salmon/salmon.merged.gene_tpm.tsv - TPM values

sarek:

results/variant_calling/*/ - VCF files
results/preprocessing/recalibrated/ - BAM files

atacseq:

results/macs2/narrowPeak/ - Peak calls
results/bwa/mergedLibrary/bigwig/ - Coverage tracks