一键导入
alphafold-fetch
Fetch and analyze AlphaFold-predicted protein structures from the AlphaFold DB or EBI.
用 Codex 或 Claude 帮你安装 复制这段 Prompt,粘贴到 Codex、Claude 或其他助手里,让它检查 Skill 页面并帮你完成安装。
菜单
Fetch and analyze AlphaFold-predicted protein structures from the AlphaFold DB or EBI.
用 Codex 或 Claude 帮你安装 复制这段 Prompt,粘贴到 Codex、Claude 或其他助手里,让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
Autonomous experiment loop that tries ideas, measures results, keeps what works, and discards what doesn't. Use when the user asks to optimize a metric, run an experiment loop, improve performance iteratively, or automate benchmarking.
Search, read, and query research papers via the `alpha` CLI (bioRxiv-backed). Use when the user asks about academic papers, wants to find research on a topic, needs to read a specific paper, ask questions about a paper, inspect a paper's code repository, or manage paper annotations.
Evaluate biomarker performance with ROC analysis, AUC, sensitivity, and specificity.
Monitor bioRxiv and medRxiv preprints for a topic, author, or keyword. Use for staying current with emerging biomedical research before peer review.
Search and summarize clinical trials from ClinicalTrials.gov and EU CTR. Use for drug development, competitive intelligence, and evidence synthesis.
Contribute changes to the Darwin repository itself. Use when the task is to add features, fix bugs, update prompts or skills, change install or release behavior, improve docs, or prepare a focused PR against this repo.
| name | alphafold-fetch |
| description | Fetch and analyze AlphaFold-predicted protein structures from the AlphaFold DB or EBI. |
Retrieve and evaluate AlphaFold structures for target proteins.
| Command | Description |
|---|---|
web_search "site:alphafold.ebi.ac.uk <uniprot-id>" | AlphaFold DB entry |
web_search "AlphaFold <protein-name> structure" | Search for structure |
90: very high confidence (backbone correct)
# AlphaFold Structure: [protein]
## UniProt ID: ...
## pLDDT Distribution
| Domain/Region | Residues | Mean pLDDT | Confidence |
## Structural Features
- Domains
- Disordered regions
- Known binding sites
- Comparison with PDB structures
## Recommendations
- Suitability for docking
- Suitability for MD simulation
- Regions requiring experimental validation
Save to outputs/alphafold-<slug>.md.