biopython
Toolkit for computational molecular biology. Manipulate sequences, parse biological file formats (FASTA, GenBank, FASTQ, PDB), access NCBI databases, run BLAST, analyze structures, build phylogenetic trees, for bioinformatics workflows.
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2025年10月23日 17:02
安装
/plugin marketplace add K-Dense-AI/claude-scientific-skills复制此命令并粘贴到 Claude Code 中以安装该技能
相关技能
kegg-database
K-Dense-AI
Query KEGG REST API for pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion, compound structures, for systems biology and enrichment analysis.
alphafold-database
K-Dense-AI
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
cosmic-database
K-Dense-AI
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
gene-database
K-Dense-AI
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
geo-database
K-Dense-AI
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
clinvar-database
K-Dense-AI
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
ensembl-database
K-Dense-AI
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
clinpgx-database
K-Dense-AI
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
gwas-database
K-Dense-AI
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
string-database
K-Dense-AI
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
uniprot-database
K-Dense-AI
Query UniProt protein database REST API. Search proteins by name/gene/accession, retrieve sequences (FASTA), annotations, ID mapping, Swiss-Prot/TrEMBL, GO terms, for protein analysis.
reactome-database
K-Dense-AI
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.