swain-init

name	swain-init
description	One-time project onboarding for swain. Invoke to set up swain, onboard this project, initialize swain, or migrate CLAUDE.md. Migrates existing CLAUDE.md content to AGENTS.md (with the @AGENTS.md include pattern), verifies vendored tk (ticket) for task tracking, configures pre-commit security hooks (gitleaks default), and offers to add swain governance rules. Use swain-doctor for ongoing per-session health checks.
user-invocable	true
license	MIT
allowed-tools	Bash, Read, Write, Edit, Grep, Glob, AskUserQuestion, Skill
metadata	{"short-description":"One-time swain project onboarding","version":"3.1.0","author":"cristos","source":"swain"}

Project Onboarding

One-time setup for adopting swain in a project. This skill is not idempotent — it migrates files and installs tools. For per-session health checks, use swain-doctor.

Run all phases in order. If a phase detects its work is already done, skip it and move to the next.

Phase 1: CLAUDE.md → AGENTS.md migration

Goal: establish the @AGENTS.md include pattern so project instructions live in AGENTS.md (which works across Claude Code, GitHub, and other tools that read AGENTS.md natively).

Step 1.1 — Survey existing files

cat CLAUDE.md 2>/dev/null; echo "---SEPARATOR---"; cat AGENTS.md 2>/dev/null

Classify the current state:

CLAUDE.md	AGENTS.md	State
Missing or empty	Missing or empty	Fresh — no migration needed
Contains only @AGENTS.md	Any	Already migrated — skip to Phase 2
Has real content	Missing or empty	Standard — migrate CLAUDE.md → AGENTS.md
Has real content	Has real content	Split — needs merge (ask user)

Step 1.2 — Migrate

Fresh state: Create both files.

# CLAUDE.md
@AGENTS.md

# AGENTS.md
(empty — governance will be added in Phase 3)

Already migrated: Skip to Phase 2.

Standard state:

1. Copy CLAUDE.md content to AGENTS.md (preserve everything).
2. If CLAUDE.md contains a <!-- swain governance --> block, strip it from the AGENTS.md copy — it will be re-added cleanly in Phase 3.
3. Replace CLAUDE.md with:

@AGENTS.md

Tell the user:

Migrated your CLAUDE.md content to AGENTS.md and replaced CLAUDE.md with @AGENTS.md. Your existing instructions are preserved — Claude Code reads AGENTS.md via the include directive.

Split state: Both files have content. Ask the user:

Both CLAUDE.md and AGENTS.md have content. How should I proceed?

1. Merge — append CLAUDE.md content to the end of AGENTS.md, then replace CLAUDE.md with @AGENTS.md
2. Keep AGENTS.md — discard CLAUDE.md content, replace CLAUDE.md with @AGENTS.md
3. Abort — leave both files as-is, skip migration

If merge: append CLAUDE.md content (minus any <!-- swain governance --> block) to AGENTS.md, replace CLAUDE.md with @AGENTS.md.

Phase 2: Verify dependencies

Goal: ensure uv is available and the vendored tk script is accessible.

Step 2.1 — Check uv availability

command -v uv

If uv is found, skip to Step 2.2.

If missing, install:

curl -LsSf https://astral.sh/uv/install.sh | sh

If installation fails, tell the user:

uv installation failed. You can install it manually (https://docs.astral.sh/uv/getting-started/installation/) — swain scripts require uv for Python execution.

Then skip the rest of Phase 2 (don't block init on uv, but warn that scripts will not function without it).

Step 2.2 — Verify vendored tk

tk (ticket) is vendored in the swain skill tree — no external installation is needed.

TK_PATH="$(find . .claude .agents -path '*/swain-do/bin/tk' -print -quit 2>/dev/null)"
test -x "$TK_PATH" && echo "tk found at $TK_PATH" || echo "tk not found"

If found, verify it runs:

"$TK_PATH" help >/dev/null 2>&1 && echo "tk works" || echo "tk broken"

If tk is not found or broken, tell the user:

The vendored tk script was not found at skills/swain-do/bin/tk. This usually means the swain-do skill was not fully installed. Try running /swain update to reinstall skills.

Step 2.3 — Migrate from beads (if applicable)

Check if this project has existing beads data:

test -d .beads && echo "beads found" || echo "no beads"

If .beads/ exists:

1. Check for backup data: ls .beads/backup/issues.jsonl 2>/dev/null
2. If backup exists, offer migration:

   Found existing .beads/ data. Migrate tasks to tk? This will convert .beads/backup/issues.jsonl to .tickets/ markdown files.

3. If user agrees, run migration:

   TK_BIN="$(cd "$(dirname "$TK_PATH")" && pwd)"
   export PATH="$TK_BIN:$PATH"
   cp .beads/backup/issues.jsonl .beads/issues.jsonl 2>/dev/null  # migrate-beads expects this location
   ticket-migrate-beads
   

4. Verify: ls .tickets/*.md 2>/dev/null | wc -l
5. Tell the user the results and that .beads/ can be removed after verification.

If .beads/ does not exist, skip this step. tk creates .tickets/ on first tk create.

Step 2.4 — swain-box symlink

Find the swain-box script in the installed skill tree and create ./swain-box as a relative symlink at the project root.

SWAIN_BOX_SCRIPT=$(find . .claude .agents -path '*/swain/scripts/swain-box' -print -quit 2>/dev/null)
if [ -n "$SWAIN_BOX_SCRIPT" ]; then
  SWAIN_BOX_REL=$(python3 -c "import os,sys; print(os.path.relpath(sys.argv[1]))" "$SWAIN_BOX_SCRIPT" 2>/dev/null || echo "$SWAIN_BOX_SCRIPT")
  if [ -L swain-box ] && [ "$(readlink swain-box)" = "$SWAIN_BOX_REL" ]; then
    echo "already linked"
  elif [ -e swain-box ] && [ ! -L swain-box ]; then
    echo "conflict — ./swain-box exists as a real file; skipping"
  else
    ln -sf "$SWAIN_BOX_REL" swain-box
    echo "created ./swain-box -> $SWAIN_BOX_REL"
  fi
fi

Tell the user: ./swain-box created — run it from this project root to launch Claude Code in a Docker Sandbox for this directory.

If the script is not found, skip silently — swain-box is not installed in this skill tree.

Phase 3: Pre-commit security hooks

Goal: configure pre-commit hooks for secret scanning so credentials are caught before they enter git history. Default scanner is gitleaks; additional scanners (TruffleHog, Trivy, OSV-Scanner) are opt-in.

Step 3.1 — Check for existing .pre-commit-config.yaml

test -f .pre-commit-config.yaml && echo "exists" || echo "missing"

If exists: Present the current config and ask:

Found existing .pre-commit-config.yaml. How should I proceed?

1. Merge — add swain's gitleaks hook alongside your existing hooks
2. Skip — leave pre-commit config unchanged
3. Replace — overwrite with swain's default config (your existing hooks will be lost)

If user chooses Skip, skip to Phase 4.

If missing: Proceed to Step 3.2.

Step 3.2 — Check pre-commit framework

command -v pre-commit && pre-commit --version

If pre-commit is not found, install it:

uv tool install pre-commit

If uv is unavailable or installation fails, warn:

pre-commit framework not available. You can install it manually (uv tool install pre-commit or pip install pre-commit). Skipping hook setup.

Skip to Phase 4 if pre-commit cannot be installed.

Step 3.3 — Create or update .pre-commit-config.yaml

The default config enables gitleaks:

repos:
  - repo: https://github.com/gitleaks/gitleaks
    rev: v8.21.2
    hooks:
      - id: gitleaks

If the user requested additional scanners (via --scanner flags or when asked), add their hooks:

TruffleHog (opt-in):

  - repo: https://github.com/trufflesecurity/trufflehog
    rev: v3.88.1
    hooks:
      - id: trufflehog
        args: ['--results=verified,unknown']

Trivy (opt-in):

  - repo: https://github.com/cebidhem/pre-commit-trivy
    rev: v1.0.0
    hooks:
      - id: trivy-fs
        args: ['--severity', 'HIGH,CRITICAL', '--scanners', 'vuln,license']

OSV-Scanner (opt-in):

  - repo: https://github.com/nicjohnson145/pre-commit-osv-scanner
    rev: v0.0.1
    hooks:
      - id: osv-scanner

Write the config file. If merging with an existing config, append the new repo entries to the existing repos: list.

Step 3.4 — Install hooks

pre-commit install

Step 3.5 — Update swain.settings.json

Read the existing swain.settings.json (if any) and add the sync.scanners key:

{
  "sync": {
    "scanners": {
      "gitleaks": { "enabled": true },
      "trufflehog": { "enabled": false },
      "trivy": { "enabled": false, "scanners": ["vuln", "license"], "severity": "HIGH,CRITICAL" },
      "osv-scanner": { "enabled": false }
    }
  }
}

Set enabled: true for any scanners the user opted into. Merge with existing settings — do not overwrite other keys.

Tell the user:

Pre-commit hooks configured with gitleaks (default). Scanner settings saved to swain.settings.json. To enable additional scanners later, edit swain.settings.json and re-run /swain-init.

Phase 4: Superpowers companion

Goal: offer to install obra/superpowers if it is not already present. Superpowers provides TDD enforcement, brainstorming, plan writing, and verification skills that swain chains into — the full AGENTS.md workflow depends on them being installed.

Step 4.1 — Detect superpowers

ls .agents/skills/brainstorming/SKILL.md .claude/skills/brainstorming/SKILL.md 2>/dev/null | head -1

If any result is returned, superpowers is already installed. Report "Superpowers: already installed" and skip to Phase 5.

Step 4.2 — Offer installation

Ask the user:

Superpowers (obra/superpowers) is not installed. It provides TDD, brainstorming, plan writing, and verification skills that swain chains into during implementation and design work.

Install superpowers now? (yes/no)

If the user says no, note "Superpowers: skipped" and continue to Phase 5. They can always install later: npx skills add obra/superpowers.

Step 4.3 — Install

npx skills add obra/superpowers

If the install succeeds, tell the user:

Superpowers installed. Brainstorming, TDD, plan writing, and verification skills are now available.

If it fails, warn:

Superpowers installation failed. You can retry manually: npx skills add obra/superpowers

Continue to Phase 5 regardless.

Step 4.4 — Tmux

Check if tmux is installed:

which tmux

If tmux is already installed, report "tmux: already installed" and continue to Phase 5.

If tmux is not found, ask the user:

tmux is not installed. swain-stage (workspace layouts) and swain-session (tab naming) require a tmux session to function. It is optional — swain works without it, but session and workspace features will be unavailable.

Install tmux now? (yes/no)

If the user says yes:

brew install tmux

If the install succeeds, tell the user:

tmux installed. Workspace layout and tab naming features are now available.

If the install fails, warn:

tmux installation failed. You can install it manually: brew install tmux

If the user says no, note "tmux: skipped" and continue to Phase 5.

Phase 5: Swain governance

Goal: add swain's routing and governance rules to AGENTS.md.

Step 5.1 — Check for existing governance

grep -l "swain governance" AGENTS.md CLAUDE.md 2>/dev/null

If found in either file, governance is already installed. Tell the user and skip to Phase 6.

Step 5.2 — Ask permission

Ask the user:

Ready to add swain governance rules to AGENTS.md. These rules:

• Route artifact requests (specs, stories, ADRs, etc.) to swain-design
• Route task tracking to swain-do (using tk)
• Enforce the pre-implementation protocol (plan before code)
• Prefer swain skills over built-in alternatives

Add governance rules to AGENTS.md? (yes/no)

If no, skip to Phase 6.

Step 5.3 — Inject governance

Read the canonical governance content from skills/swain-doctor/references/AGENTS.content.md. Locate it by searching for the file relative to the installed skills directory:

find .claude/skills .agents/skills skills -path '*/swain-doctor/references/AGENTS.content.md' -print -quit 2>/dev/null

Append the full contents of that file to AGENTS.md.

Tell the user:

Governance rules added to AGENTS.md. These ensure swain skills are routable and conventions are enforced. You can customize anything outside the <!-- swain governance --> markers.

Phase 6: Finalize

Step 6.1 — Create .agents directory

mkdir -p .agents

This directory is used by swain-do for configuration and by swain-design scripts for logs.

Step 6.2 — Run swain-doctor

Invoke the swain-doctor skill. This validates .tickets/ health, checks stale locks, removes legacy skill directories, and ensures governance is correctly installed.

Step 6.3 — Onboarding

Invoke the swain-help skill in onboarding mode to give the user a guided orientation of what they just installed.

Step 6.4 — Summary

Report what was done:

swain init complete.

• CLAUDE.md → @AGENTS.md include pattern: [done/skipped/already set up]
• tk (ticket) verified: [done/not found]
• Beads migration: [done/skipped/no beads found]
• Pre-commit security hooks: [done/skipped/already configured]
• Superpowers: [installed/skipped/already present]
• tmux: [installed/skipped/already present]
• Swain governance in AGENTS.md: [done/skipped/already present]

Re-running init

If the user runs /swain init on a project that's already set up, each phase will detect its work is done and skip. The only interactive phase is governance injection (Phase 5), which checks for the <!-- swain governance --> marker before asking.

To force a fresh governance block, delete the <!-- swain governance --> ... <!-- end swain governance --> section from AGENTS.md and re-run.