القائمة
جمع SkillsMP عدد ٣٢ من skills من Delphine-L/claude_global. افتح أي skill لمراجعة مصدره وتفاصيله.
عرض ٣٢ من أصل ٣٢ skills مجمعة.
Run shell commands bare — no decorative echo headers ("=== X ==="), no echo-then-cmd chains, no trailing "echo done". Use the Bash tool's description field for any narration. Triggers any time you're about to issue a Bash command.
لغة النص الأصلي: الإنجليزية
Expert guide for managing Claude Code global skills and commands. Use when creating new skills, symlinking to projects, updating existing skills, or organizing the centralized skill repository.
لغة النص الأصلي: الإنجليزية
Token optimization best practices for cost-effective Claude Code usage. Automatically applies efficient file reading, command execution, and output handling strategies. Includes model selection guidance (Opus for learning, Sonnet for development/debugging).…
لغة النص الأصلي: الإنجليزية
BioBlend and Planemo expertise for Galaxy workflow automation. Galaxy API usage, workflow invocation, status checking, error handling, batch processing, and dataset management. Essential for any Galaxy automation project.
لغة النص الأصلي: الإنجليزية
Expert in Galaxy tool wrapper development, XML schemas, Planemo testing, and best practices for creating Galaxy tools
لغة النص الأصلي: الإنجليزية
Expert in Galaxy workflow development, testing, and IWC best practices. Create, validate, and optimize .ga workflows following Intergalactic Workflow Commission standards.
لغة النص الأصلي: الإنجليزية
Maintain per-workflow developer logs in Obsidian when working on Galaxy workflows. Use whenever creating, version-bumping, fixing, or updating an IWC/Galaxy `.ga` workflow or its `-tests.yml`. Logs detailed changes, test YAML edits, and `planemo` invocation…
لغة النص الأصلي: الإنجليزية
VGP assembly pipeline - Galaxy workflow selection, execution patterns, QC checkpoints, and batch orchestration
لغة النص الأصلي: الإنجليزية
Best practices for data aggregation, recalculation, and category management in scientific analyses. Covers when to recalculate vs reuse aggregated data, handling category changes, and ensuring analytical accuracy.
لغة النص الأصلي: الإنجليزية
Best practices for creating clear, accurate scientific visualizations with matplotlib, seaborn, and other Python plotting libraries. Covers common pitfalls, optimization techniques, publication-quality figure generation, and Claude API image size constraints.
لغة النص الأصلي: الإنجليزية
Organize research project documentation - structure working files, prepare sharing packages, maintain clean project layout
لغة النص الأصلي: الإنجليزية
Best practices for creating comprehensive Jupyter notebook data analyses with statistical rigor, outlier handling, and publication-quality visualizations. Includes Claude API image size helpers.
لغة النص الأصلي: الإنجليزية
Best practices for iterative refinement of publication-quality scientific figures. Covers systematic improvement workflows, layout optimization, and ensuring all figure elements are publication-ready.
لغة النص الأصلي: الإنجليزية
Core bioinformatics concepts including SAM/BAM format, AGP genome assembly format, sequencing technologies (Hi-C, HiFi, Illumina), quality metrics, and common data processing patterns. Essential for debugging alignment, filtering, pairing issues, and AGP…
لغة النص الأصلي: الإنجليزية
Phylogenetic tree analysis, visualization, annotation management, and iTOL troubleshooting
لغة النص الأصلي: الإنجليزية
Publication-quality bioinformatics figures - phylogenetic trees, genome browsers, iTOL datasets, and data presentation
لغة النص الأصلي: الإنجليزية
Best practices for using Claude Code in team environments. Covers skill management, knowledge capture, version control, and collaborative workflows.
لغة النص الأصلي: الإنجليزية
Best practices for session documentation - incremental summaries, fix reports, and audit trails
لغة النص الأصلي: الإنجليزية
Structured 4-phase debugging methodology. Use when encountering any bug, test failure, unexpected behavior, or pipeline error — before proposing fixes. Enforces root cause investigation first.
لغة النص الأصلي: الإنجليزية
Enforces evidence-based completion claims. Use before claiming work is done, tests pass, or bugs are fixed. Requires running verification commands and confirming output before any success claims.
لغة النص الأصلي: الإنجليزية
HackMD collaborative markdown - slide presentations, embedded SVG diagrams, and real-time editing best practices
لغة النص الأصلي: الإنجليزية
Prepare organized packages of project files for sharing at different levels - from summary PDFs to fully reproducible archives. Creates copies with cleaned notebooks, documentation, and appropriate file selection. After creating sharing package, all work…
لغة النص الأصلي: الإنجليزية
Unified Python interface to 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome, PSICQUIC). Best for cross-database analysis, ID mapping, and multi-service workflows. For quick single-database lookups use gget.
لغة النص الأصلي: الإنجليزية
Fast CLI/Python queries to 20+ bioinformatics databases. Gene info, BLAST, AlphaFold structures, enrichment analysis, single-cell data, disease associations. Best for interactive exploration and quick lookups. For batch/multi-database Python workflows use…
لغة النص الأصلي: الإنجليزية
Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance via GraphQL API. Essential for variant pathogenicity interpretation, rare disease genetics, and identifying…
لغة النص الأصلي: الإنجليزية
Expert in Galaxy Training Network (GTN) tutorial development. GTN markdown syntax, special boxes, tool references, snippets, YAML front matter, and best practices for writing and updating training materials in the galaxyproject/training-material repository.
لغة النص الأصلي: الإنجليزية
Smart automated backup system with skill integration. Detects project type (notebooks, data files, HackMD docs) and applies appropriate cleanup before backup. Rolling daily backups, compressed milestones, and CHANGELOG tracking.
لغة النص الأصلي: الإنجليزية
Best practices for organizing project folders, file naming conventions, and directory structure standards for research and development projects
لغة النص الأصلي: الإنجليزية
Best practices for managing development environments including Python venv and conda. Always check environment status before installations and confirm with user before proceeding.
لغة النص الأصلي: الإنجليزية
Integration with Obsidian vault for managing notes, tasks, and knowledge when working with Claude. Supports adding notes, creating tasks, and organizing project documentation. Updated with 2025-2026 best practices including MOCs, properties, practical…
لغة النص الأصلي: الإنجليزية
Access and navigate GenomeArk AWS S3 bucket - VGP assemblies, QC data, and species directory structure
لغة النص الأصلي: الإنجليزية
Expert in building and testing conda/bioconda recipes, including recipe creation, linting, dependency management, and debugging common build errors
لغة النص الأصلي: الإنجليزية