organic-chemistry

name	organic-chemistry
description	Chemistry of carbon compounds
license	MIT
compatibility	opencode
metadata	{"audience":"organic chemists, researchers, students","category":"chemistry"}

What I do

• Study carbon-based compounds and reactions
• Analyze organic reaction mechanisms
• Design synthetic routes
• Characterize organic molecules
• Investigate stereochemistry
• Develop new synthetic methods

When to use me

• When studying organic reactions
• When designing syntheses
• When analyzing mechanisms
• When working with functional groups
• When determining stereochemistry
• When characterizing organic compounds

Key Concepts

Functional Groups

Class	Structure	Example
Alkane	C-H, C-C	CH₄
Alkene	C=C	C₂H₄
Alkyne	C≡C	C₂H₂
Alcohol	-OH	C₂H₅OH
Ether	R-O-R'	diethyl ether
Aldehyde	-CHO	CH₃CHO
Ketone	R-CO-R'	acetone
Carboxylic acid	-COOH	acetic acid
Amine	-NH₂	ethylamine

Reaction Mechanisms

# Example: SN1 vs SN2 reaction analysis
def reaction_type(substrate, nucleophile, solvent):
    """
    Determine likely mechanism.
    """
    # SN2: Primary alkyl halide, strong nucleophile, polar aprotic
    if substrate in ['methyl', 'primary'] and nucleophile == 'strong':
        return 'SN2'
    
    # SN1: Tertiary alkyl halide, weak nucleophile, polar protic
    elif substrate == 'tertiary' and nucleophile == 'weak':
        return 'SN1'
    
    # E2: Strong base, anti-periplanar H
    elif nucleophile == 'strong_base':
        return 'E2'
    
    return 'mixture'

Stereochemistry

• Chiral centers
• Enantiomers vs diastereomers
• R/S configuration
• E/Z isomerism (alkenes)
• Meso compounds
• Optical activity

Synthesis Strategies

• Retrosynthetic analysis
• Functional group transformations
• Protecting groups
• Carbon-carbon bond formation
• Oxidation/reduction
• Stereocontrol