flonat

Use when you need to audit a research project against the init-project-research template.

Use when you need to validate a paper's bibliography — cross-references \cite{} keys against .bib files or embedded \bibitem entries, finds missing/unused/typo'd keys, and checks every key against the Paperpile library via the local resolver. Deep verification mode spawns parallel agents for DOI/metadata validation at scale. Fix mode rekeys drifted keys to canonical and stages missing entries for Paperpile.

Use when you need to bootstrap a full research project with directory scaffold and Overleaf symlink.

Use when you need to create a preprint / working-paper variant of a paper currently in conference or journal format. Forks the existing Overleaf project — adds a `preprint/` subfolder using the user's `your-template` Template, ports the body content from the source paper. The preprint is accessed locally via the existing `paper-{venue}/paper/preprint/` path (subfolder under the conference paper's symlink); no separate `paper-wp/` directory. Trigger on "set up a working paper", "create a preprint", "WP version", "arXiv-ready version", "ready to preprint". Never creates a new top-level Overleaf project — always nests inside the existing one. Never uses the conference's own style (.sty / .cls); always swaps to `your-template`.

Use when you need academic proofreading of a LaTeX paper (11 check categories).

Use when you need to assemble, anonymize, or audit a replication package.

Use when you need a mid-draft adversarial review of a paper — runs paper-critic + domain-reviewer + claim-verify + blindspot in parallel, then auto-synthesises into a prioritised revision plan. Distinct from /pre-submission-report (final-gate kitchen sink, 13 sub-agents) — this is the active-drafting feedback loop. Triggers: 'review my draft', 'adversarial review', 'cluster review', 'mid-draft critique', 'feedback before pre-submission'.

Use when mosh hangs / fails to connect to a headless Mac mini after a Tailscale update or restart, OR when a remote-access tool (RustDesk, VNC, AnyDesk) fails to reach its public relay from an MDM-managed client. Layers — Tailscale daemon health (dual-install conflict, headless GUI-app limitation, Homebrew launchd takeover), downstream mosh-server cleanup (stale UDP bindings to old Tailscale IP), macOS resolver stuck state, and Tailscale direct-IP as relay-bypass fallback. Symptoms include `could not get canonical name for <host>`, `failed to connect to local Tailscale service`, `Tailscale.CLIError error 1`, `Connection closed by UNKNOWN port 65535`, `Failed to connect to rs-ny.rustdesk.com:21116: Please try later`.

Use when you need to compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.

Use when you need to extract citations from a PDF and generate a validated .bib file. Reads the PDF, identifies all referenced works, constructs BibTeX entries with metadata verification, then runs bib-validate.

Use when you need to check a LaTeX submission against a PDF assessment brief.

Use when you need to replicate a quantitative analysis in a second language (R↔Python↔Stata↔Julia) to verify correctness. Level 1 of the verification hierarchy.

Use when you need to challenge research assumptions or stress-test arguments.

Review user-facing documentation for accuracy, consistency, and completeness across private, public, nested repos, and the user manual. Use when docs feel stale, after major changes, or before sharing. (Replaces `repo-doc-audit`)

Use when you need to compile all LaTeX projects and check cross-project consistency.

Use when you need to compile a LaTeX document — includes autonomous error resolution, citation audit, and quality scoring.