| name | synthetic-bio-circuit-designer |
| description | Design gene circuits for synthetic biology applications |
| version | 1.0.0 |
| category | Bioinfo |
| tags | [] |
| author | AIPOCH |
| license | MIT |
| status | Draft |
| risk_level | Medium |
| skill_type | Tool/Script |
| owner | AIPOCH |
| reviewer | |
| last_updated | 2026-02-06 |
Synthetic Bio Circuit Designer
Design and simulate gene circuits for synthetic biology.
Usage
python scripts/main.py --type toggle --p1 P1 --p2 P2
python scripts/main.py --type oscillator
Circuit Types
- Toggle switch: Bistable genetic switch
- Oscillator: Repressilator circuit
Output
- Circuit design
- Component list
- Expected behavior
Risk Assessment
| Risk Indicator | Assessment | Level |
|---|
| Code Execution | Python/R scripts executed locally | Medium |
| Network Access | No external API calls | Low |
| File System Access | Read input files, write output files | Medium |
| Instruction Tampering | Standard prompt guidelines | Low |
| Data Exposure | Output files saved to workspace | Low |
Security Checklist
Prerequisites
No additional Python packages required.
Evaluation Criteria
Success Metrics