Produce Word (.docx) documents from markdown manuscript sections. Use when asked to generate a Word document, create a docx, compile the manuscript, or export to Word. Assembles markdown sections, embeds figures/tables, and converts via pandoc with…
Search PubMed for scientific literature. Use when asked to find papers, search literature, look up publications, or gather references on a topic. Returns article titles, authors, abstracts, and PMIDs.
Analyze DNA microarray data from GEO datasets. Use when asked to analyze microarray data, perform differential expression analysis, or when given a GEO accession (GSE*). Handles Affymetrix (CEL files) and Illumina (BeadChip) platforms with QC, normalization,…
Analyze bulk RNA-seq count data using DESeq2. Use when asked to analyze RNA-seq data, perform differential expression analysis from count matrices, or when given a GEO accession (GSE*) with RNA-seq data. Handles raw count matrices with QC, normalization,…
Execute tasks using OpenAI's Codex CLI. Use when asked to run codex, use OpenAI for code review, or delegate coding tasks to Codex. Supports non-interactive execution, code review, and task automation.