biosample-genomics

BioSample & Genome Cross-Reference - Cross-reference biosample and genome data: NCBI biosample, genome report, sequence reports, and taxonomy. Use this skill for genomics tasks involving get biosample report get genome dataset report by accession get genome sequence reports get taxonomy. Combines 4 tools from 1 SCP server(s).

الانتقال إلى التثبيت

المستودع: InternScience/DrClaw
آخر نشاط في المصدر: ١٣ مارس ٢٠٢٦ في ١٥:٠٨
لغة SKILL.md المكتشفة: الإنجليزية
النجوم: ١٧٢
التفرعات: ٩

خيارات التثبيت

يُحدَّد Prompt الذي يراجع المصدر أولًا بشكل افتراضي. يمكنك التبديل إلى أمر مباشر أو تنزيل نسخة محلية.

التثبيت باستخدام Codex أو Claude انسخ هذا Prompt والصقه في Codex أو Claude أو مساعد آخر ليراجع صفحة Skill ويثبّتها لك.

يتجاوز الأمر المباشر Prompt المخصّص للمراجعة. افحص المصدر قبل تشغيله.

npx skills add https://github.com/InternScience/DrClaw --skill biosample-genomics

يبقى الأمر في سطر واحد. مرّر أفقيًا لمراجعته كاملًا قبل النسخ.

تفضّل نسخة محلية؟ نزّل الملفات المتاحة حاليًا لدى SkillsMP.

مراجعة ملفات المصدر

اقرأ SKILL.md وأي ملفات مرافقة يعرضها SkillsMP قبل أن تقرر التثبيت.

SKILL.md

تعليمات المصدر · معاينة للقراءة فقط

العودة إلى البحث العودة إلى التثبيت

acpx

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2026-03-19

docx

Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.

2026-03-16

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Convert a user style request into concrete rewrite constraints and apply that style during de-flavoring. Use when the user specifies a target tone, audience, or writing persona.

2026-03-16

عرض الكل من هذا المستودع

name	biosample_genomics
description	BioSample & Genome Cross-Reference - Cross-reference biosample and genome data: NCBI biosample, genome report, sequence reports, and taxonomy. Use this skill for genomics tasks involving get biosample report get genome dataset report by accession get genome sequence reports get taxonomy. Combines 4 tools from 1 SCP server(s).
i18n	{"zh":{"description":"生物样本与基因组交叉引用。"}}

BioSample & Genome Cross-Reference

Discipline: Genomics | Tools Used: 4 | Servers: 1

Description

Cross-reference biosample and genome data: NCBI biosample, genome report, sequence reports, and taxonomy.

Tools Used

get_biosample_report from ncbi-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI
get_genome_dataset_report_by_accession from ncbi-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI
get_genome_sequence_reports from ncbi-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI
get_taxonomy from ncbi-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI

Workflow

Get biosample report
Get genome dataset report
Get sequence reports

import asyncio import json from mcp import ClientSession from mcp.client.streamable_http import streamablehttp_client from mcp.client.sse import sse_client SERVERS = { "ncbi-server": "https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI" } async def connect(url, transport_type): transport = streamablehttp_client(url=url, headers={"SCP-HUB-API-KEY": "<YOUR_SCP_HUB_API_KEY>"}) read, write, _ = await transport.__aenter__() ctx = ClientSession(read, write) session = await ctx.__aenter__() await session.initialize() return session, ctx, transport def parse(result): try: if hasattr(result, 'content') and result.content: c = result.content[0] if hasattr(c, 'text'): try: return json.loads(c.text) except: return c.text return str(result) except: return str(result) async def main(): # Connect to required servers sessions = {} sessions["ncbi-server"], _, _ = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/9/Origene-NCBI", "streamable-http") # Execute workflow steps # Step 1: Get biosample report result_1 = await sessions["ncbi-server"].call_tool("get_biosample_report", arguments={}) data_1 = parse(result_1) print(f"Step 1 result: {json.dumps(data_1, indent=2, ensure_ascii=False)[:500]}") # Step 2: Get genome dataset report result_2 = await sessions["ncbi-server"].call_tool("get_genome_dataset_report_by_accession", arguments={}) data_2 = parse(result_2) print(f"Step 2 result: {json.dumps(data_2, indent=2, ensure_ascii=False)[:500]}") # Step 3: Get sequence reports result_3 = await sessions["ncbi-server"].call_tool("get_genome_sequence_reports", arguments={}) data_3 = parse(result_3) print(f"Step 3 result: {json.dumps(data_3, indent=2, ensure_ascii=False)[:500]}") # Step 4: Get taxonomy result_4 = await sessions["ncbi-server"].call_tool("get_taxonomy", arguments={}) data_4 = parse(result_4) print(f"Step 4 result: {json.dumps(data_4, indent=2, ensure_ascii=False)[:500]}") # Cleanup print("Workflow complete!") if __name__ == "__main__": asyncio.run(main())

biosample-genomics

خيارات التثبيت

مراجعة ملفات المصدر

BioSample & Genome Cross-Reference

Description

Tools Used

Workflow

BioSample & Genome Cross-Reference

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example

biosample-genomics

معلومات المصدر

خيارات التثبيت

مراجعة ملفات المصدر

المزيد من هذا المستودع

المزيد من هذا المستودع

BioSample & Genome Cross-Reference

Description

Tools Used

Workflow

BioSample & Genome Cross-Reference

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example