molclaw-chai1-predict

name	molclaw-chai1-predict
description	Predict protein structures with Chai-1 from sequence or FASTA input and return model scoring summaries.
license	MIT license
metadata	{"skill-author":"PJLab"}

Chai-1 Protein Structure Prediction

Note:

• Local files are not directly accessible by the server. Please upload them to the server using molclaw-file-transfer before execution.
• For PDB file inputs, it is recommended to preprocess them using molclaw-pdbfixer before execution.
• Please refer to skill molclaw-scp-server to complete tool invocation.

Usage

1. Chai-1 Prediction (Sequence/FASTA)

The description of tool chai1_predict.

Predict protein structures with Chai-1 from sequence or FASTA input, run inference (unless dry-run), and return per-model scoring summaries for downstream selection.
Args:
    mode (str): One of 'sequence', 'fasta', or 'info'; API also accepts 'predict' as an alias of 'sequence'.
    seq (str|None): Comma-separated protein sequence(s) for sequence mode, e.g., "MKFL...,AIQR...".
    name (str|None): Comma-separated chain names corresponding to `seq`; defaults to chain_1, chain_2, ... if omitted.
    fasta_path (str|None): Path to an input FASTA file for fasta mode.
    samples (int): Number of models/samples to generate, must be >= 1. Default: 5.
    dry_run (bool): If True, only prepare inputs and write `input.fasta` without running Chai-1 inference.
Return:
    status (str): 'success' or 'error'.
    msg (str): Human-readable summary or error message.
    output_dir (str|None): Run artifact directory path.
    model_scores (List[dict]|None): Per-model summaries with keys 'model_idx', 'cif_path', 'scores', and 'score_path'.
    best_model (dict|None): Top model summary with keys 'model_idx', 'aggregate_score', and 'cif_path'.