mcp-cytoscnpy

# CytoScnPy MCP Server Enable AI assistants (Claude, Cursor, Copilot) to use CytoScnPy code metrics tools via MCP. > **Requires:** Standalone CLI binary (`cytoscnpy-cli`). The Python package does not support `mcp-server`. ## Quick Setup ### Claude Desktop Add to `claude_desktop_config.json`: ```json { "mcpServers": { "cytoscnpy": { "command": "cytoscnpy", "args": ["mcp-server"] } } } ``` ### VS Code + Copilot The VS Code extension automatically registers the MCP server. Just ask Copilot: ```text "Run a security scan on this file" ``` No extra config needed when extension is installed. ### Cursor Same config as Claude Desktop — add to Cursor's MCP settings. ## Available Tools When connected, CytoScnPy exposes code analysis tools to the AI assistant: - **Security scan** — Detect secrets, keys, tokens - **Danger scan** — Detect dangerous code patterns - **Quality scan** — Code quality metrics (complexity, maintainability) - **Clone detection** — Find duplicate code - **Raw metrics** — LOC, SLOC, comments, blanks ## VS Code Extension Settings | Setting | Default | Description | |---------|---------|-------------| | `cytoscnpy.analysisMode` | `workspace` | `workspace` (accurate) or `file` (fast) | | `cytoscnpy.enableSecretsScan` | `false` | Scan for keys/tokens | | `cytoscnpy.enableDangerScan` | `false` | Dangerous code patterns | | `cytoscnpy.enableQualityScan` | `false` | Code quality metrics | | `cytoscnpy.enableCloneScan` | `false` | Clone detection | | `cytoscnpy.confidenceThreshold` | `0` | Min confidence (0-100) | | `cytoscnpy.excludeFolders` | `[]` | Folders to exclude | | `cytoscnpy.includeFolders` | `[]` | Folders to force-include | | `cytoscnpy.maxComplexity` | `10` | Max Cyclomatic Complexity | | `cytoscnpy.minMaintainabilityIndex` | `40` | Min Maintainability Index | | `cytoscnpy.maxNesting` | `3` | Max nesting depth | | `cytoscnpy.maxArguments` | `5` | Max function arguments | | `cytoscnpy.maxLines` | `50` | Max function lines | ## CI/CD Output Formats CytoScnPy supports JSON, GitLab, SARIF, and GitHub Annotations for CI/CD integration. ## Reference See `references/integrations.md` for full details.