crossbar-data-api

name	crossbar-data-api
description	CROssBAR Data API skill. Use when working with CROssBAR Data for activities, assays, drugs. Covers 13 endpoints.
version	1.0.0
generator	lapsh

CROssBAR Data API

API version: 1.0

Auth

No authentication required.

Base URL

https://www.ebi.ac.uk/Tools/crossbar

Setup

1. No auth setup needed
2. GET /activities -- verify access

Endpoints

13 endpoints across 10 groups. See references/api-spec.lap for full details.

activities

Method	Path	Description
GET	/activities	Get ChEMBL activities

assays

Method	Path	Description
GET	/assays	Get ChEMBL assays

drugs

Method	Path	Description
GET	/drugs	drugs collected from Drugbank

efo

Method	Path	Description
GET	/efo	Get EFO diseases data

hpo

Method	Path	Description
GET	/hpo	Get HPO phenotypes data

intact

Method	Path	Description
GET	/intact	Molecular Interactions collected from IntAct

molecules

Method	Path	Description
GET	/molecules	Get ChEMBL molecules

proteins

Method	Path	Description
GET	/proteins	Proteins collected from Uniprot for selective tax ids HUMAN(9606), MOUSE(10090), RAT(10116), BOVINE(9913), ESCHERICHIA_COLI(83333), SUS_SCROFA(9823), MYCOBACTERIUM_TUBERCULOSIS(83332), ORYCTOLAGUS_CUNICULUS(9986), SACCHAROMYCES_CEREVISIAE(559292), CVHSA(694009) & SARS2(2697049)

pubchem

Method	Path	Description
GET	/pubchem/bioassays	Get pubchem bioassays
GET	/pubchem/bioassays/sids	Get pubchem bioassays associated to particular substance ids (sid) & outcome
GET	/pubchem/compounds	Get pubchem compounds
GET	/pubchem/substances	Get pubchem substances

targets

Method	Path	Description
GET	/targets	Get ChEMBL targets

Common Questions

Match user requests to endpoints in references/api-spec.lap. Key patterns:

• "List all activities?" -> GET /activities
• "List all assays?" -> GET /assays
• "List all drugs?" -> GET /drugs
• "List all efo?" -> GET /efo
• "List all hpo?" -> GET /hpo
• "List all intact?" -> GET /intact
• "List all molecules?" -> GET /molecules
• "List all proteins?" -> GET /proteins
• "List all bioassays?" -> GET /pubchem/bioassays
• "List all sids?" -> GET /pubchem/bioassays/sids
• "List all compounds?" -> GET /pubchem/compounds
• "List all substances?" -> GET /pubchem/substances
• "List all targets?" -> GET /targets

Response Tips

• Check response schemas in references/api-spec.lap for field details

References

• Full spec: See references/api-spec.lap for complete endpoint details, parameter tables, and response schemas

Generated from the official API spec by LAP