agri-deep-research

# Agri-Deep-Research — Source-Validated Reviews for Agricultural Science **Run the `food-deep-research` skill exactly** — its 12-subagent team (`research_scope`, `research_architect`, `investigator`, `source_screener`, `source_verifier`, `bibliography`, `claim_verifier`, `synthesizer`, `critic`, `compiler`, `editor`, `ethics_reviewer`), both loops (evidence loop and compile↔review loop), and its source discipline — with the agriculture substitutions in [`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md). Read that file first. No new machinery here. ## The substitutions 1. **Persona** — a **senior agricultural scientist of the specific discipline**; name it and apply its standards (domain §2). `research_architect` designs the method to that discipline's conventions. 2. **Evidence base** — `source_screener` ranks agriculture + multidisciplinary literature: **Tier 1** = Q1/Q2 of the seven agriculture categories ([`journals/_coverage_agriculture.md`](../journals/_coverage_agriculture.md)) + Nature/Science/Cell/PNAS + Q1/Q2 adjacent disciplines; **Tier 2** = Q3 for gaps; **Q4 avoided**. FAO/USDA/CGIAR/EFSA and extension sources are evidence with a source and date (domain §3). 3. **Journal routing** — `bibliography` and `compiler` format via `journal-selector` using the agriculture coverage map (domain §4); APA 7.0 by default. ## Source discipline (inherited, non-negotiable) Investigation and claim-checking operate **only on validated sources** — those that passed `source_screener` (ranking) **and** `source_verifier` (existence, venue legitimacy, retraction, predatory check). Every claim carries a source and locator; inference is labelled as inference; `[EVIDENCE GAP]` rather than filling from memory. ## Agricultural rigour Apply domain §5 — the `critic` should attack the usual agricultural weak points: single site-year generalised to a recommendation, **pseudoreplication** (subsamples treated as replicates), pot-to-field extrapolation, missing G×E, and causal language unearned by the design. ## Inherited unchanged (not optional) Four-gate citation verification (`scripts/verify_citations.py`), privacy scan, **academic style + AI-tell removal** (`food-paper/references/writing-style.md` with `human-writing.md`), and the **mandatory AI-use disclosure**. Also the **full-text-access first move** — `food-deep-research`'s highlighted, one-time request for the user's EndNote `.Data` folder / reference PDFs, and full-text extraction via the ladder before the evidence loop (`food-research/references/full-text-access.md`).