chao-rag-wiki

name	chao-rag-wiki
description	Use when building or querying a RAG knowledge base over the local raw/ document corpus using turbovec vector search. Triggers: 'build rag', 'rag query', 'search my docs', 'what do my notes say about', '索引 raw', 'rag 检索', or any mention of 'chao-rag-wiki' / 'rag wiki'.

Chao RAG Wiki

Build a vector index over the documents in raw/ and answer questions by retrieving the most relevant chunks. Retrieval is hybrid: dense semantic search (turbovec TurboQuantIndex) fused with lexical BM25 keyword search and literal full-text matching via Reciprocal Rank Fusion, with an optional LLM rerank second stage. turbovec keeps the whole corpus in a few MB of RAM; BM25 and full-text are built on the fly at query time from the stored chunk texts.

Embeddings come from any OpenAI-compatible /embeddings endpoint, selected by RAG_EMBED_* env vars (default: Qianfan bge-large-zh, 1024-d). See Embedding provider below.

Unlike karpathy-llm-wiki (which compiles raw sources into hand-curated articles), this skill leaves raw/ untouched and answers questions directly from semantic retrieval — no manual compilation step.

Embedding provider

The embedding client (embed.py) is provider-agnostic — it POSTs the standard OpenAI {"model","input"} body to whatever endpoint you configure:

Env var	Default	Meaning
RAG_EMBED_BASE_URL	https://qianfan.baidubce.com/v2	API base (no /embeddings)
RAG_EMBED_API_KEY	—	Bearer key; falls back to QIANFAN_API_KEY, then OPENAI_API_KEY
RAG_EMBED_MODEL	bge-large-zh	model name
RAG_EMBED_DIM	1024	expected vector dimension
RAG_EMBED_BATCH	16	inputs per request

Provider examples (export, then build):

• Qianfan (default) — set RAG_EMBED_API_KEY (or the legacy QIANFAN_API_KEY).
• OpenAI — RAG_EMBED_BASE_URL=https://api.openai.com/v1, RAG_EMBED_API_KEY=$OPENAI_API_KEY, RAG_EMBED_MODEL=text-embedding-3-small, RAG_EMBED_DIM=1536.
• Voyage (Anthropic recommends Voyage for embeddings — Claude itself has no embedding API) — RAG_EMBED_BASE_URL=https://api.voyageai.com/v1, RAG_EMBED_MODEL=voyage-3, RAG_EMBED_DIM=1024.
• OneAPI / OpenRouter / local vLLM — point BASE_URL/KEY/MODEL at the gateway; same OpenAI-compatible shape.

The build records model + base_url in manifest.json. Querying must use the same model the index was built with — dense/hybrid mode re-embeds the query, so a mismatch is rejected with an error (switch back or rebuild). Pure --mode bm25 needs no embedding and works regardless. Changing provider/model/dim requires a full rebuild.

Layout

The corpus (raw/) and index (.rag/) live under a single root: the RAG_ROOT env var if set, otherwise the current working directory. So by default everything is relative to where you run the scripts; set export RAG_ROOT=/path/to/wiki to point the skill at a fixed location regardless of cwd. --raw / --out still override per-invocation.

$RAG_ROOT (or cwd)/
  raw/                     # source corpus (read-only) — .md / .txt / .markdown
  .rag/                    # generated index (created here, gitignore-able)
    index.tv               # turbovec quantized vector index
    meta.json              # row -> {path, title, heading, text}
    vectors.npy            # raw embeddings (reused on --update)
    manifest.json          # build config (model, base_url, dim) + per-file hashes

Helper scripts live in scripts/ relative to this file:

• setup_check.py — first-run preflight: deps, API key, live endpoint check.
• embed.py — provider-agnostic OpenAI-compatible embedding client.
• ragpaths.py — resolves the RAG root (RAG_ROOT env var, else cwd).
• bm25.py — dependency-free BM25 (CJK-aware) for lexical retrieval.
• fulltext.py — dependency-free literal substring / regex matcher.
• rerank.py — optional LLM listwise reranker (provider-agnostic chat API).
• build_rag.py — chunk + embed + write the index.
• query_rag.py — hybrid/dense/bm25 search, optional --rerank.

A pre-provisioned virtualenv with turbovec, numpy, requests sits at <skill>/.venv. Always invoke the scripts with <skill>/.venv/bin/python.

Requires an embedding API key: RAG_EMBED_API_KEY (falls back to the legacy QIANFAN_API_KEY, already set for this user) — see Embedding provider above to use a different one.

First run — configure the embedding model

On the first use of this skill in a project (no .rag/ exists yet, or the user is clearly setting it up for the first time), do NOT jump straight to building. The skill depends on an online embedding model, so guide the user through configuration first:

1. Ensure the venv + deps exist (see Setup below).

2. Run the preflight check — it verifies deps, the API key, and that the embedding endpoint actually responds with the right vector dimension:

   <skill>/.venv/bin/python <skill>/scripts/setup_check.py
   

3. Read its output and act on each [!!] line:

   • no embedding API key set — the user must pick a provider and set a key. The default is Qianfan (bge-large-zh, 1024-d) via RAG_EMBED_API_KEY (or the legacy QIANFAN_API_KEY fallback); for another provider set RAG_EMBED_BASE_URL + RAG_EMBED_API_KEY + RAG_EMBED_MODEL + RAG_EMBED_DIM (see Embedding provider for OpenAI / Voyage / gateway examples). Have them export it in their shell profile (~/.zshrc) so it persists. Never hard-code the key into any file. Re-run the check after they set it.
   • embedding call failed / unreachable — likely a bad key, wrong model name, or no network to the endpoint. Surface the exact message.
   • dimension mismatch — the chosen model returns a different size; tell them to set RAG_EMBED_DIM to the reported value before building.

4. Only once the check prints READY, proceed to Build.

The default Qianfan bge-large-zh is the tested path, but any OpenAI-compatible embedding provider works (see Embedding provider). This skill uses an online embedding API by design (no local model).

Setup (run once, or if the venv is missing)

If <skill>/.venv/bin/python does not exist:

python3 -m venv <skill>/.venv
<skill>/.venv/bin/pip install -q turbovec numpy requests

---

Build

Trigger: "build the rag", "index raw/", "rebuild the index", "add new docs".

If this is the first build in the project, run First run — configure the embedding model above first. Then, from the project root (where raw/ lives) — or with RAG_ROOT exported, from anywhere:

<skill>/.venv/bin/python <skill>/scripts/build_rag.py

--raw / --out default to $RAG_ROOT/raw and $RAG_ROOT/.rag (or ./raw and ./.rag when RAG_ROOT is unset); pass them explicitly to override.

• Walks raw/ recursively, splits each file on markdown headings into ~1200-char chunks, embeds them, and writes .rag/.
• Progress prints to stderr; the corpus here is ~775 files / a few thousand chunks and takes a few minutes (network-bound on the embedding API).

Incremental update (continuous indexing) — raw/ grows daily. After files are added, edited, or deleted, re-run with --update. The build hashes every file's content and only (re)embeds the new or changed ones; unchanged files reuse their cached vectors from vectors.npy, and deleted files drop out of the index automatically. A no-op --update (nothing changed) costs no embedding calls and rewrites nothing.

<skill>/.venv/bin/python <skill>/scripts/build_rag.py \
  --raw raw --out .rag --update

The scan line reports exactly what changed, e.g. scan: files=776 | +1 new ~0 changed =775 unchanged -0 removed.

Dry run — preview what an update would do without embedding or writing:

<skill>/.venv/bin/python <skill>/scripts/build_rag.py \
  --raw raw --out .rag --check

Automate daily — to keep the index fresh without thinking about it, the user can add a cron/launchd job (or a git post-merge hook) that runs the --update command above. It is safe to run repeatedly: a no-op exits in seconds. If the user asks to "set this up to run automatically" or "index every day", offer to configure it via the update-config skill (a hook) or a cron entry, and confirm the schedule with them first.

Tell the user when the build finishes: the scan summary (new/changed/unchanged/ removed) and how many chunks were freshly embedded vs reused.

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Query

Trigger: "what do my docs say about X", "rag query …", "search my notes for …".

1. If .rag/index.tv is missing, tell the user to build first (do not auto-build a multi-minute job without asking).

2. Retrieve the top chunks as JSON (hybrid is the default and best general choice):

   <skill>/.venv/bin/python <skill>/scripts/query_rag.py \
     --out .rag --query "USER QUESTION" -k 8 --json
   

   Retrieval modes (--mode):

   • hybrid (default) — fuses dense (semantic), BM25 (keyword), and full-text (literal) with Reciprocal Rank Fusion. Use for almost everything.
   • dense — vector search only. Best for paraphrased / conceptual questions where wording won't match.
   • bm25 — keyword search only. Best for exact terms, rare tokens, code identifiers, names, error strings — anything where the literal string matters more than meaning.
   • fulltext — literal substring match only (case-insensitive), or a regex with --regex. Stricter than BM25: it fires only when the verbatim query string appears in a chunk. Best for exact phrases, code identifiers, error strings, and names. In hybrid this leg simply contributes nothing when there's no literal hit, so it boosts exact matches without hurting paraphrased queries.

   In --json (and the plain view) each hit carries its own dense, bm25, and fulltext sub-scores alongside the fused score, so you can see why it ranked. fulltext is a raw match count (integer); dense/bm25 are their respective retriever scores. The fused score is an RRF value (small, ~0.01–0.05); compare hits to each other, not to an absolute threshold. --rrf-k tunes fusion (default 60; lower sharpens the top ranks).

   --rerank (optional second-stage LLM rerank) — retrieval is fast but approximate; an LLM judge is slower but understands the query better. Add --rerank to re-score a wider candidate pool (default top 20, tune with --rerank-pool) by true relevance, then take the top-k from that reordering:

   <skill>/.venv/bin/python <skill>/scripts/query_rag.py \
     --out .rag --query "USER QUESTION" -k 8 --rerank --json
   

   • Adds one chat-LLM call (~10s); use it when precision matters more than latency, or when raw retrieval looks noisy / off-topic.
   • Reranked hits carry a rerank score (0–10) and the response sets "reranked": true. Order results by rerank when present.
   • Best-effort: if the rerank call fails it logs rerank skipped: … and falls back to retrieval order — never errors out.
   • Works with any --mode (including bm25, which needs no embeddings).
   • Provider via RAG_RERANK_* env (defaults to the embedding endpoint + ernie-3.5-8k); see Embedding provider / Conventions.

3. Synthesize the answer yourself from the returned chunks — do not just dump them. Read the text fields, write a coherent answer, and cite sources as markdown links to the raw files, e.g. [标题](raw/topic/file.md).

   • Prefer retrieved content over your own training knowledge.
   • If the chunks don't actually answer the question, say so — don't hallucinate from thin matches. In hybrid mode the fused score is an RRF rank value; lean on the per-hit dense/bm25 sub-scores (and the rerank score if present) to judge relevance, and treat unrelated hits with skepticism.
   • Raise -k for broad/synthesis questions, lower it for pinpoint lookups.

4. For a quick human-readable dump (debugging, "just show me the matches"), drop --json (add --full for untruncated chunk text).

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Conventions

• raw/ is read-only. This skill never modifies source documents.
• The index lives in .rag/ under the RAG root (RAG_ROOT env var, else cwd). Safe to delete and rebuild.
• Embedding model + base_url + dim are recorded in manifest.json; dense/hybrid queries verify the live RAG_EMBED_MODEL matches and error on mismatch (turbovec also stores dim/bit_width in the .tv).
• turbovec returns row ids in insertion order, which map 1:1 to meta.json rows — that is how a hit becomes a source file + heading.
• BM25 and full-text need no index file, rebuild, or API key — they are constructed at query time from meta.json chunk texts, so they work on any existing index offline. fulltext matches the verbatim query (or a regex with --regex); bm25 matches tokenized terms.
• Provider config is all env vars (see Embedding provider): RAG_EMBED_*. No keys are ever hard-coded or written into the index. Must rebuild if you change provider/model/dim.
• Rerank provider is separate: RAG_RERANK_BASE_URL / RAG_RERANK_API_KEY / RAG_RERANK_MODEL (default: the embedding endpoint + key chain, model ernie-3.5-8k). It's a chat completion endpoint, not an embeddings one, and is only used when --rerank is passed.