القائمة
Skills في هذا المستودع
جمع SkillsMP عدد ١٬٢١١ من skills من stanfish06/skillquarium. افتح أي skill لمراجعة مصدره وتفاصيله.
stanfish06/skillquariumعرض ٤٠ من أصل ١٬٢١١ skills مجمعة.
All-in-one FASTQ QC and adapter trimming. Auto-detects Illumina adapters, filters low-quality reads, corrects paired-end overlaps, emits HTML+JSON QC in one pass. 3-10x faster than Trim Galore/Trimmomatic. First step before STAR, BWA-MEM2, or Salmon.
لغة النص الأصلي: الإنجليزية
Use when Codex is already in the finding-discovery phase of a security scan or the user explicitly asks to discover candidate security findings in a repository or code change. Do not use as the primary trigger for full PR, commit, branch, patch, or repository…
لغة النص الأصلي: الإنجليزية
Statistical fine-mapping of GWAS loci using SuSiE, SuSiE-inf, and Approximate Bayes Factors to identify credible sets and posterior inclusion probabilities (PIPs) for causal variant discovery. SuSiE-inf adds an infinitesimal polygenic component for improved…
لغة النص الأصلي: الإنجليزية
Use when the user explicitly asks to fix and verify a validated or plausible security finding. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.
لغة النص الأصلي: الإنجليزية
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
لغة النص الأصلي: الإنجليزية
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or…
لغة النص الأصلي: الإنجليزية
DDA/DIA mass-spectrometry proteomics workflows with FragPipe, MSFragger, IonQuant, DIA-NN, Pyteomics, pyopenms, matchms, polars, and query. Use when searching raw proteomics data, controlling peptide/protein FDR, parsing mzML/mzIdentML/mzTab/MGF, or…
لغة النص الأصلي: الإنجليزية
Run browser-game playtests and frontend QA. Use when the user asks for smoke tests, screenshot-based verification, browser automation, HUD or overlay review, or structured issue-finding in a browser game.
لغة النص الأصلي: الإنجليزية
Route early browser-game work. Use when the user needs stack selection and workflow planning across design, implementation, assets, and playtesting before moving to a specialist skill.
لغة النص الأصلي: الإنجليزية
Design UI surfaces for browser games. Use when the user asks for HUDs, menus, overlays, responsive layouts, or visual direction that must protect the playfield.
لغة النص الأصلي: الإنجليزية
Generate wrapper interfaces and DI registration for hard-to-test static dependencies in C#, when the abstraction does NOT exist yet. Produces IFileSystem, IEnvironmentProvider, IConsole, IProcessRunner wrappers, or guides first-time adoption of TimeProvider…
لغة النص الأصلي: الإنجليزية
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for…
لغة النص الأصلي: الإنجليزية
Authoring GitHub Actions CI/CD workflows — workflow/job/step structure, triggers, build-test matrices, dependency caching, secrets and least-privilege permissions, reusable workflows, and common Python/Node CI recipes. Use when creating or fixing…
لغة النص الأصلي: الإنجليزية
Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For glycoprotein engineering, therapeutic…
لغة النص الأصلي: الإنجليزية
Elite UX/UI & Advanced GSAP Motion Engineer. Enforces Python-driven true randomization for layout variance, strict AIDA page structure, wide editorial typography (bans 6-line wraps), gapless bento grids, strict GSAP ScrollTriggers (pinning, stacking,…
لغة النص الأصلي: الإنجليزية
Grades a specified set of test methods individually and produces a concise table mapping each test (fully-qualified name) to a letter grade (A–F), a score band, and a one-line note — designed to be posted as a PR comment. Use when the caller wants per-test…
لغة النص الأصلي: الإنجليزية
Iteratively improves a PR (GitHub), MR (GitLab), or shelved changelist (Perforce) until Greptile gives it a 5/5 confidence score with zero unresolved comments. Triggers Greptile review, fixes all actionable comments, pushes/re-shelves, re-triggers review, and…
لغة النص الأصلي: الإنجليزية
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine…
لغة النص الأصلي: الإنجليزية
Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. Use when an agent needs GWAS beta / SE / p-value for every variant in a window for one specific study (GCST accession). Input: accession,…
لغة النص الأصلي: الإنجليزية
Harmony batch correction for single-cell data in scanpy workflows, with scvi-tools as the heavier alternative. Use when integrating scRNA-seq or single-cell multi-sample embeddings across batches, donors, chemistries, or experiments using harmonypy or…
لغة النص الأصلي: الإنجليزية
Use when creating or configuring a persistent HeyGen avatar or digital twin for the agent, the user, or a named presenter, including prompt-based avatar creation, photo-based identity setup, voice selection, or passing an avatar identity to video generation.…
لغة النص الأصلي: الإنجليزية
Use when generating a HeyGen presenter video, personalized video message, talking-head explainer, tutorial, product demo, video pitch, or avatar-led update. Also use when the user says “make a video of me saying...” or provides an avatar identity. If the…
لغة النص الأصلي: الإنجليزية
Teaches the AI to design like a high-end agency. Defines the exact fonts, spacing, shadows, card structures, and animations that make a website feel expensive. Blocks all the common defaults that make AI designs look cheap or generic.
لغة النص الأصلي: الإنجليزية
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing, tissue detection, tile extraction, and stain normalization for H&E images. Best for simple pipelines, dataset preparation, and quick tile-based analysis. For advanced spatial…
لغة النص الأصلي: الإنجليزية
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
لغة النص الأصلي: الإنجليزية
Evaluates a preliminary research idea against a five-dimension framework (Higher, Faster, Stronger, Cheaper, Broader) plus idea-lifecycle and student-capability matching, paradigm-shift probing, and a fatal-flaws audit. Returns a reviewer-style verdict. Use…
لغة النص الأصلي: الإنجليزية
Turn plugin-eval findings into a concrete rewrite brief for a Codex skill. Use when the user already evaluated a skill and now wants Codex to improve it, especially after asking what to fix first.
لغة النص الأصلي: الإنجليزية
Drafts a 6-paragraph Introduction outline for a technical paper from a structured Flowchart: background and running example, existing limitations, problem essence and goal, key challenges, solution overview, contributions. Positions the paper as Technique or…
لغة النص الأصلي: الإنجليزية
JavaScript testing with Jest — unit tests, mocks, spies, snapshot testing, code coverage, and configuration. Use when writing or running JavaScript/TypeScript tests, setting up a test suite with Jest, debugging failing tests, mocking modules or functions,…
لغة النص الأصلي: الإنجليزية
Use when working with LaminDB, the open-source lineage-native lakehouse for biological datasets and models. Covers setup, artifact registration, query/search, lineage tracking, validation, ontology-backed annotation with Bionty, collections, branches,…
لغة النص الأصلي: الإنجليزية
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
لغة النص الأصلي: الإنجليزية
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. This is the default poster skill for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column…
لغة النص الأصلي: الإنجليزية
Local document and PDF parsing with spatial text and bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; OCR on scans; layout-preserved JSON for RAG; batch-ingesting paper folders; or page screenshots for multimodal agents —…
لغة النص الأصلي: الإنجليزية
LLM and agent security red teaming with agentic-actions-auditor, supply-chain-risk-auditor, semgrep, codeql, and sarif-parsing. Use for prompt injection, tool misuse, data exfiltration, excessive agency, insecure output handling, supply-chain risk, retrieval…
لغة النص الأصلي: الإنجليزية
LLM and agent observability, tracing, and evaluation workflows with langfuse, phoenix-cli, and phoenix-evals. Use when instrumenting Langfuse, Phoenix, OpenTelemetry GenAI traces, eval datasets, prompt experiments, latency/cost debugging, trace scoring, or…
لغة النص الأصلي: الإنجليزية
Render a 4-panel regional LocusCompare diagnostic for one (lead variant, exposure study, outcome study) tuple - overlays GWAS Manhattan, QTL Manhattan, GENCODE gene track, and cross-trait scatter colored by LD r². Use when an agent needs visual confirmation…
لغة النص الأصلي: الإنجليزية
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with…
لغة النص الأصلي: الإنجليزية
Analyze data using MATLAB. Use when the task involves tables, timetables, time-series data, numeric arrays, sensor matrices, or gridded data — including but not limited to exploring, filtering, sorting, cleaning, transforming, aggregating, smoothing, padding,…
لغة النص الأصلي: الإنجليزية
Analyze the effective toolbox file set to produce a Dependency Manifest — classify all transitive dependencies as included, product, add-on, or external-unresolved, then present resolution options with tradeoffs. Use after matlab-define-toolbox-api when the…
لغة النص الأصلي: الإنجليزية
Assess toolbox readiness and suggest improvements — validates help text, tests, coverage, code issues, dependencies, and function signatures. Produces a punch list and can execute fixes via delegate skills on user approval. Use before packaging or when asked…
لغة النص الأصلي: الإنجليزية