talmolab

Create a well-structured GitHub PR with proper branching, testing, formatting, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation,…

Scaffolds a structured investigation in scratch/ for empirical research and documentation. Use when the user says "start an investigation" or wants to: trace code paths or data flow ("trace from X to Y", "what touches X", "follow the wiring"), document system…

Handle SLEAP GitHub support workflow for issues and discussions. Use when the user says "support", provides a GitHub issue/discussion number like "#2512", or asks to investigate a user report from talmolab/sleap. Scaffolds investigation folders, downloads…

Capture and visually inspect Qt GUI widgets using screenshots. Use when asked to verify GUI rendering, test widget appearance, check layouts, or visually inspect any PySide6/Qt component. Enables Claude to "see" Qt interfaces by capturing offscreen…

Test local Jekyll build and visualize pages using Playwright MCP. Starts the development server, navigates through key pages, captures screenshots, and validates rendering. Use when testing local changes before deployment.

Interactive guide for adding new lab members to the website. Gathers information via web research, helps write appropriate bios, optimizes images, and generates properly formatted member files. Use when adding new team members, updating member info, or…

Generate comprehensive lab member rosters in both markdown and CSV formats. Analyzes member profiles, git history, and alumni information to create detailed rosters with role transitions, team assignments, and career tracking. Use when user mentions roster,…

Scaffolds a structured investigation in scratch/ for empirical research and documentation. Use when the user says "start an investigation" or wants to: trace code paths or data flow ("trace from X to Y", "what touches X", "follow the wiring"), document system…

Run test coverage analysis, identify missed and partial lines, and write tests to improve coverage. Use this when the user asks to check coverage, improve coverage, or write tests for uncovered code. This skill detects both completely missed lines and…

Create a well-structured GitHub PR for sleap-app with proper branching, testing, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation,…

Inspect, interact with, and test the running SLEAP desktop (Tauri) app via the `tauri-pilot` CLI. Use when driving the desktop GUI, automating clicks/typing/navigation, taking screenshots, reading the DOM/accessibility tree, or debugging the desktop build's…

Create a well-structured GitHub PR with proper branching, testing, formatting, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation,…

Scaffolds a structured investigation in scratch/ for empirical research and documentation. Use when the user says "start an investigation" or wants to: trace code paths or data flow ("trace from X to Y", "what touches X", "follow the wiring"), document system…

Use when asked to refresh, publish, or share the sleap-roots ↔ Bloom program's status dashboard for Elizabeth's subgroup — e.g. "update the roadmap artifact", "share the status page", "what's the state of the program for the meeting". Sweeps live state across…

Use when submitting, monitoring, exec-ing into, or troubleshooting RunAI GPU jobs for the sleap-roots pipeline on the Salk cluster (project busch-lab / namespace runai-busch-lab) — e.g. running the predictor stage interactively, debugging a stuck pod, or…

Create a well-structured GitHub PR with proper branching, testing, formatting, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation,…

Critically review an OpenSpec proposal using a team of specialized subagents. Use when: reviewing proposals before approval, validating spec quality, checking TDD plans, ensuring scientific rigor (metadata, reproducibility, traceability), and verifying GitHub…

Scaffolds a structured investigation in scratch/ for empirical research and documentation. Use when the user says "start an investigation" or wants to: trace code paths or data flow ("trace from X to Y", "what touches X", "follow the wiring"), document system…

Scaffolds a template for a small investigation for empirical experimentation. Use when the user asks for an investigation, experiment or research to support making design decisions, assess performance or try out a new idea that requires data or an MVP.