Initialize a new user's research assistant. Use this on first interaction or when user asks to "get started", "set up", or "introduce yourself". Also use when you don't know the user's research interests or the human memory block still has placeholder text.
Walk the user through new Thoth features since their last onboarding or update. Use when the user asks "what's new", "what changed", or "what can you do now". Also use after check_whats_new returns updates to walk through them.
Create, manage, and iterate on research plan documents in the Obsidian vault. Use when the user asks for a research plan, literature review roadmap, or when you need to formalize your own working research strategy.
Conduct deep analysis of research papers, synthesize literature, and generate comprehensive reviews. Use when user needs thorough paper analysis, literature reviews, or cross-paper synthesis.
Manage external knowledge collections (textbooks, lecture notes, background material) and search them to support research. Use when user wants to upload reference material or query foundational knowledge.
Answer questions using your existing research collection and external knowledge. Use when user asks questions about papers they have, wants summaries, or seeks insights from their knowledge base.
Customize what information is extracted from papers (schema) and how it's extracted (prompts). Use when the user wants to change analysis fields, instructions, or prompt templates.
Manage and optimize the RAG (Retrieval-Augmented Generation) system including reindexing, search optimization, and custom index creation. Use when user wants to improve search quality, reindex their collection, or create specialized indexes.