alterlab-qutip

name	alterlab-qutip
description	Simulates open quantum systems with QuTiP, the Quantum Toolbox in Python, solving Lindblad master equations (mesolve), Monte Carlo trajectories (mcsolve), and unitary dynamics (sesolve). Use when studying master-equation or Lindblad dynamics, decoherence, dissipation, quantum optics, cavity QED, or open-system time evolution. NOT for circuit-based quantum computing or hardware execution — for IBM Quantum circuits prefer alterlab-qiskit, for Google Quantum AI or NISQ circuits prefer alterlab-cirq, and for gradient-trained quantum ML prefer alterlab-pennylane. Part of the AlterLab Academic Skills suite.
license	MIT
allowed-tools	Read Write Edit Bash(python:*)
compatibility	No API key required. Runs locally via `uv run python`; requires the qutip Python package.
metadata	{"skill-author":"AlterLab","version":"1.1.0"}

QuTiP: Quantum Toolbox in Python

Overview

QuTiP provides comprehensive tools for simulating and analyzing quantum mechanical systems. It handles both closed (unitary) and open (dissipative) quantum systems with multiple solvers optimized for different scenarios.

Installation

uv pip install qutip

This skill targets QuTiP 5.x (verified against 5.3.0). Key v5 API changes from v4: solver options are a plain dict (the old Options/solver.Options class is gone), stochastic solvers use heterodyne=True/False instead of a noise code, and progress_bar takes a string ('text'/'tqdm'/'') rather than True.

Optional packages for additional functionality:

# Quantum information processing (circuits, gates)
uv pip install qutip-qip

# Quantum optimal control (GRAPE/CRAB pulse optimization)
uv pip install qutip-qtrl

Quick Start

from qutip import *
import numpy as np
import matplotlib.pyplot as plt

# Create quantum state
psi = basis(2, 0)  # |0⟩ state

# Create operator
H = sigmaz()  # Hamiltonian

# Time evolution
tlist = np.linspace(0, 10, 100)
result = sesolve(H, psi, tlist, e_ops=[sigmaz()])

# Plot results
plt.plot(tlist, result.expect[0])
plt.xlabel('Time')
plt.ylabel('⟨σz⟩')
plt.show()

Core Capabilities

1. Quantum Objects and States

Create and manipulate quantum states and operators:

# States
psi = basis(N, n)  # Fock state |n⟩
psi = coherent(N, alpha)  # Coherent state |α⟩
rho = thermal_dm(N, n_avg)  # Thermal density matrix

# Operators
a = destroy(N)  # Annihilation operator
H = num(N)  # Number operator
sx, sy, sz = sigmax(), sigmay(), sigmaz()  # Pauli matrices

# Composite systems
psi_AB = tensor(psi_A, psi_B)  # Tensor product

See references/core_concepts.md for comprehensive coverage of quantum objects, states, operators, and tensor products.

2. Time Evolution and Dynamics

Multiple solvers for different scenarios:

# Closed systems (unitary evolution)
result = sesolve(H, psi0, tlist, e_ops=[num(N)])

# Open systems (dissipation)
c_ops = [np.sqrt(0.1) * destroy(N)]  # Collapse operators
result = mesolve(H, psi0, tlist, c_ops, e_ops=[num(N)])

# Quantum trajectories (Monte Carlo)
result = mcsolve(H, psi0, tlist, c_ops, ntraj=500, e_ops=[num(N)])

Solver selection guide:

• sesolve: Pure states, unitary evolution
• mesolve: Mixed states, dissipation, general open systems
• mcsolve: Quantum jumps, photon counting, individual trajectories
• brmesolve: Weak system-bath coupling
• fmmesolve: Time-periodic Hamiltonians (Floquet)

See references/time_evolution.md for detailed solver documentation, time-dependent Hamiltonians, and advanced options.

3. Analysis and Measurement

Compute physical quantities:

# Expectation values
n_avg = expect(num(N), psi)

# Entropy measures
S = entropy_vn(rho)  # Von Neumann entropy
C = concurrence(rho)  # Entanglement (two qubits)

# Fidelity and distance
F = fidelity(psi1, psi2)
D = tracedist(rho1, rho2)

# Correlation functions
corr = correlation_2op_1t(H, rho0, taulist, c_ops, A, B)
w, S = spectrum_correlation_fft(taulist, corr)

# Steady states
rho_ss = steadystate(H, c_ops)

See references/analysis.md for entropy, fidelity, measurements, correlation functions, and steady state calculations.

4. Visualization

Visualize quantum states and dynamics:

# Bloch sphere
b = Bloch()
b.add_states(psi)
b.show()

# Wigner function (phase space)
xvec = np.linspace(-5, 5, 200)
W = wigner(psi, xvec, xvec)
plt.contourf(xvec, xvec, W, 100, cmap='RdBu')

# Fock distribution
plot_fock_distribution(psi)

# Matrix visualization
hinton(rho)  # Hinton diagram
matrix_histogram(H.full())  # 3D bars

See references/visualization.md for Bloch sphere animations, Wigner functions, Q-functions, and matrix visualizations.

5. Advanced Methods

Specialized techniques for complex scenarios:

# Floquet theory (periodic Hamiltonians)
T = 2 * np.pi / w_drive
f_modes, f_energies = floquet_modes(H, T, args)
result = fmmesolve(H, psi0, tlist, c_ops, T=T, args=args)

# HEOM (non-Markovian, strong coupling)
from qutip.solver.heom import HEOMSolver, BosonicBath
# Bath correlation as a sum of exponentials: ck_real, vk_real, ck_imag, vk_imag
bath = BosonicBath(Q, ck_real, vk_real, ck_imag, vk_imag)
hsolver = HEOMSolver(H_sys, [bath], max_depth=5)
result = hsolver.run(rho0, tlist)

# Permutational invariance (identical particles)
from qutip.piqs.piqs import dicke, jspin  # not exported at qutip.piqs top level
psi = dicke(N, j, m)  # Dicke states
Jz = jspin(N, 'z')  # Collective operators

See references/advanced.md for Floquet theory, HEOM, permutational invariance, stochastic solvers, superoperators, and performance optimization.

Common Workflows

Simulating a Damped Harmonic Oscillator

# System parameters
N = 20  # Hilbert space dimension
omega = 1.0  # Oscillator frequency
kappa = 0.1  # Decay rate

# Hamiltonian and collapse operators
H = omega * num(N)
c_ops = [np.sqrt(kappa) * destroy(N)]

# Initial state
psi0 = coherent(N, 3.0)

# Time evolution
tlist = np.linspace(0, 50, 200)
result = mesolve(H, psi0, tlist, c_ops, e_ops=[num(N)])

# Visualize
plt.plot(tlist, result.expect[0])
plt.xlabel('Time')
plt.ylabel('⟨n⟩')
plt.title('Photon Number Decay')
plt.show()

Two-Qubit Entanglement Dynamics

# Create Bell state
psi0 = bell_state('00')

# Local dephasing on each qubit
gamma = 0.1
c_ops = [
    np.sqrt(gamma) * tensor(sigmaz(), qeye(2)),
    np.sqrt(gamma) * tensor(qeye(2), sigmaz())
]

# Track entanglement
tlist = np.linspace(0, 10, 100)
result = mesolve(qeye([2, 2]), psi0, tlist, c_ops)

# With collapse operators, result.states are density matrices (type 'oper'),
# so pass them straight to concurrence() — do NOT call .proj() on them.
C_t = [concurrence(state) for state in result.states]

plt.plot(tlist, C_t)
plt.xlabel('Time')
plt.ylabel('Concurrence')
plt.title('Entanglement Decay')
plt.show()

Jaynes-Cummings Model

# System parameters
N = 10  # Cavity Fock space
wc = 1.0  # Cavity frequency
wa = 1.0  # Atom frequency
g = 0.05  # Coupling strength

# Operators
a = tensor(destroy(N), qeye(2))  # Cavity
sm = tensor(qeye(N), sigmam())  # Atom

# Hamiltonian (RWA)
H = wc * a.dag() * a + wa * sm.dag() * sm + g * (a.dag() * sm + a * sm.dag())

# Initial state: cavity in coherent state, atom in ground state
psi0 = tensor(coherent(N, 2), basis(2, 0))

# Dissipation
kappa = 0.1  # Cavity decay
gamma = 0.05  # Atomic decay
c_ops = [np.sqrt(kappa) * a, np.sqrt(gamma) * sm]

# Observables
n_cav = a.dag() * a
n_atom = sm.dag() * sm

# Evolve
tlist = np.linspace(0, 50, 200)
result = mesolve(H, psi0, tlist, c_ops, e_ops=[n_cav, n_atom])

# Plot
fig, axes = plt.subplots(2, 1, figsize=(8, 6), sharex=True)
axes[0].plot(tlist, result.expect[0])
axes[0].set_ylabel('⟨n_cavity⟩')
axes[1].plot(tlist, result.expect[1])
axes[1].set_ylabel('⟨n_atom⟩')
axes[1].set_xlabel('Time')
plt.tight_layout()
plt.show()

Tips for Efficient Simulations

1. Truncate Hilbert spaces: Use smallest dimension that captures dynamics
2. Choose appropriate solver: sesolve for pure states is faster than mesolve
3. Time-dependent terms: String format (e.g., 'cos(w*t)') is fastest
4. Store only needed data: Use e_ops instead of storing all states
5. Adjust tolerances: Balance accuracy with computation time via the options dict (atol/rtol/nsteps)
6. Parallel trajectories: mcsolve automatically uses multiple CPUs
7. Check convergence: Vary ntraj, Hilbert space size, and tolerances

Troubleshooting

Memory issues: Reduce Hilbert space dimension, use store_final_state option, or consider Krylov methods

Slow simulations: Use string-based time-dependence, increase tolerances slightly, or try method='bdf' for stiff problems

Numerical instabilities: Decrease time steps (nsteps option), increase tolerances, or check Hamiltonian/operators are properly defined

Import errors: Ensure QuTiP is installed correctly; quantum gates require qutip-qip package

References

This skill includes detailed reference documentation:

• references/core_concepts.md: Quantum objects, states, operators, tensor products, composite systems
• references/time_evolution.md: All solvers (sesolve, mesolve, mcsolve, brmesolve, etc.), time-dependent Hamiltonians, solver options
• references/visualization.md: Bloch sphere, Wigner functions, Q-functions, Fock distributions, matrix plots
• references/analysis.md: Expectation values, entropy, fidelity, entanglement measures, correlation functions, steady states
• references/advanced.md: Floquet theory, HEOM, permutational invariance, stochastic methods, superoperators, performance tips

External Resources

• Documentation: https://qutip.readthedocs.io/
• Tutorials: https://qutip.org/qutip-tutorials/
• API Reference: https://qutip.readthedocs.io/en/stable/apidoc/apidoc.html
• GitHub: https://github.com/qutip/qutip