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Build an evidence matrix linking a gene list to a phenotype, pathway, or biological question using literature and local knowledge.
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| name | gene_evidence_matrix |
| description | Build an evidence matrix linking a gene list to a phenotype, pathway, or biological question using literature and local knowledge. |
| category | bio/literature |
| version | 1 |
| requires_tools | ["ncbi_eutils","uniprot_api","search_knowledge_base","python_repl"] |
| requires_network | true |
| user_invocable | true |
| tags | ["evidence","gene-list","phenotype","matrix","literature"] |
| aliases | ["evidence_table_builder"] |
| species | any |
| modality | literature |
| stage | interpretation |
| stability | evolving |
| safety_level | medium |
Summarize how strongly each gene in a list is supported by literature or local knowledge for a specific phenotype, pathway, or mechanism.
Use this skill when the user wants to compare several candidate genes against one biological question, such as exhaustion, apoptosis, interferon response, or cytokine signaling.
search_knowledge_base for any local protocol, note, or playbook relevant to the question.ncbi_eutils to search the gene plus the question.uniprot_api for a concise function check when needed.python_repl to assemble an evidence matrix with fields such as: