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Generate an sbatch script template for GPU or CPU jobs (Slurm).
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Based on SOC occupation classification
| name | slurm_job_template |
| description | Generate an sbatch script template for GPU or CPU jobs (Slurm). |
| category | bio/compute |
| version | 1 |
| requires_tools | ["python_repl","write_file"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | compute |
| stage | utilities |
| stability | experimental |
| safety_level | medium |
User needs a Slurm sbatch script for a compute job (e.g. Python, R, nextflow) with GPU or CPU.
Gather: Get job name, partition/qos if known, GPU count, CPU count, memory, time, and main command.
Template: Use python_repl to build sbatch lines:
Output: Print the full script. Optionally use write_file to save under knowledge/ or user-specified path if they ask.
Remind: Note that they should edit paths and commands before submitting.
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