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Fetch protein entry from UniProt by ID or gene name (function, domains, organism).
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Based on SOC occupation classification
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | uniprot_lookup |
| description | Fetch protein entry from UniProt by ID or gene name (function, domains, organism). |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User asks for protein info: function, domains, organism, or UniProt ID.
Search: If gene name: https://rest.uniprot.org/uniprotkb/search?query=gene_exact:{gene}&format=json. If ID: direct fetch by ID.
Parse: protein_name, function, organism, optional domains/features. Extract first entry if multiple.
Present: Entry ID, name, function, organism, and optional link.
