BrainStOrmics/Spateo-Skills

spateo-full-pipeline

Run the complete Spateo pipeline — IO through Morphogenesis

spateo-data-io

Read spatial transcriptomics data — 10 platforms + auto-detect

spateo-slice-alignment

Spatial alignment of tissue slices — 2D→3D registration

spateo-morphogenesis

Vector field inference, trajectory analysis, GLM differential expression

spateo-3d-reconstruction

3D model generation, gene expression interpolation, morphology analysis

spateo-env-setup

Set up Spateo runtime environment — choose conda or uv