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cyanheads/pubmed-mcp-server

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SkillsMP catalog refreshed
skills collected
25
GitHub stars
162
GitHub forks
24

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Skills in this repository

classification pending

Showing 25 of 25 collected skills.

occupation
unclassified
description

DataCanvas primitive reference — a Tier 3 SQL/analytical workspace for tabular MCP servers, backed by DuckDB. Use when registering tables from upstream APIs, running ad-hoc SQL across them, and exporting results. Covers the acquire → register → query → export…

updated
occupation
unclassified
description

Reference for core and server configuration in `@cyanheads/mcp-ts-core`. Covers env var tables with defaults, priority order, server-specific Zod schema pattern, and Workers lazy-parsing requirement.

updated
occupation
unclassified
description

McpError constructor, JsonRpcErrorCode reference, and error handling patterns for `@cyanheads/mcp-ts-core`. Use when looking up error codes, understanding where errors should be thrown vs. caught, or using ErrorHandler.tryCatch in services.

updated
occupation
unclassified
description

Catalog of OpenTelemetry instrumentation built into framework `@cyanheads/mcp-ts-core` — spans, metrics, completion logs, env config, runtime caveats, custom instrumentation patterns, and cardinality rules. Use when enabling OTel export, adding custom spans…

updated
occupation
unclassified
description

API reference for all utilities exported from `@cyanheads/mcp-ts-core/utils`. Use when looking up utility method signatures, options, peer dependencies, or usage patterns.

updated
occupation
unclassified
description

Exercise tools, resources, and prompts against a live HTTP server via MCP JSON-RPC over curl. Starts the server, surfaces the catalog, runs real and adversarial inputs, measures every call (bytes, token estimate, wall-clock) and weighs the catalog, renders…

updated
occupation
unclassified
description

Land working-tree changes as logical commits — the work grouped by concern, topped by a release commit (version bump, changelog, regenerated artifacts). The work commits land first, then the version bump, verification, and the release commit on top. Stops at…

updated
occupation
unclassified
description

Finalize documentation and project metadata for a ship-ready MCP server. Use after implementation is complete, tests pass, and devcheck is clean. Safe to run at any stage — each step checks current state and only acts on what still needs work.

updated
occupation
unclassified
description

Review an MCP server for common security gaps: LLM-facing surfaces as injection vector (tools, resources, prompts, descriptions), scope blast radius, destructive ops without consent, upstream auth shape, input sinks (URL / path / roots / shell / schema…

updated
occupation
unclassified
description

Scaffold a new MCP tool definition. Use when the user asks to add a tool, create a new tool, or implement a new capability for the server.

updated
occupation
unclassified
description

Authentication, authorization, and multi-tenancy patterns for `@cyanheads/mcp-ts-core`. Use when implementing auth scopes on tools/resources, configuring auth modes (none/jwt/oauth), working with JWT/OAuth env vars, or understanding how tenantId flows through…

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occupation
unclassified
description

Canonical reference for the unified `Context` object passed to every tool and resource handler in `@cyanheads/mcp-ts-core`. Covers the full interface, its `RequestContext` base, all sub-APIs (`ctx.log`, `ctx.state`, `ctx.requestInput`, `ctx.inputs`,…

updated
occupation
unclassified
description

MCP definition linter rules reference. Use when `bun run lint:mcp` or `bun run devcheck` reports a lint error or warning (`format-parity`, `schema-is-object`, `name-format`, `server-json-*`, etc.) and you need to understand the rule, its severity, and how to…

updated
occupation
unclassified
description

Stand up a persistent, self-refreshing local mirror of a bulk upstream dataset with the MirrorService (@cyanheads/mcp-ts-core/mirror). Use when a server wraps a large or slow API and should query a synced local index (embedded SQLite + FTS5) instead of…

updated
occupation
unclassified
description

Testing patterns for MCP tool/resource handlers using `createMockContext` and Vitest. Covers mock context options, handler testing, McpError assertions, format testing, Vitest config setup, and test isolation conventions.

updated
occupation
unclassified
description

Design the tool surface, resources, and service layer for a new MCP server. Use when starting a new server, planning a major feature expansion, or when the user describes a domain/API they want to expose via MCP. Produces a design doc at docs/design.md that…

updated
occupation
unclassified
description

Read-only audit of MCP definition language across an existing surface — tools, resources, prompts, server instructions. Walks every definition file and checks 16 categories the LLM reads to decide whether and how to call: voice & tense, internal leaks,…

updated
occupation
unclassified
description

Scaffold a test file for an existing tool, resource, or service. Use when the user asks to add tests, improve coverage, or when a definition exists without a matching test file.

updated
occupation
unclassified
description

Pick and run a multi-phase workflow that chains foundational task skills (`git-wrapup`, `release-and-publish`, `maintenance`, `field-test`, `setup`, etc.) end-to-end. Routes user intent to a workflow file under `workflows/` — greenfield builds, maintenance +…

updated
occupation
unclassified
description

Ship a release end-to-end across every registry the project targets (npm, MCP Registry, GitHub Releases for `.mcpb` bundles, GHCR). Runs the final verification gate, fast-forwards `main` when the release rode a release PR, creates the annotated tag on the…

updated
occupation
unclassified
description

Post-init orientation for an MCP server built on @cyanheads/mcp-ts-core. Use after running `@cyanheads/mcp-ts-core init` to understand the project structure, conventions, and skill sync model. Also use when onboarding to an existing project for the first time.

updated
occupation
unclassified
description

Cloudflare Workers deployment using `createWorkerHandler` from `@cyanheads/mcp-ts-core/worker`. Covers the full handler signature, binding types, CloudflareBindings extensibility, runtime compatibility guards, and wrangler.toml requirements.

updated
occupation
unclassified
description

Investigate, adopt, and verify dependency updates — with special handling for `@cyanheads/mcp-ts-core`. Captures what changed, understands why, cross-references against the codebase, adopts framework improvements, syncs project skills, and runs final checks.…

updated
occupation
unclassified
description

File a bug or feature request against @cyanheads/mcp-ts-core when you hit a framework issue. Use when a builder, utility, context method, or config behaves contrary to the documented API — not for server-specific application bugs.

updated
occupation
unclassified
description

File a bug or feature request against this MCP server's own repo. Use for server-specific issues — tool logic, service integrations, config problems, or domain bugs that aren't caused by the framework.

updated
Showing 25 of 25 collected skills.