agent-observability-eval-pipeline

name

agent-observability-eval-pipeline

description

End-to-end Agent Observability pipeline for an instrumented ml_app — classify production traces, root-cause failures, bootstrap evaluators, then (optionally) sample + publish a dataset, generate + run an experiment, and analyze results. Six narrated phases with a standardized banner and a "continue" checkpoint between each. Pure orchestration over the agent-observability sub-skills (`agent-observability-session-classify`, `agent-observability-trace-rca`, `agent-observability-eval-bootstrap`, `agent-observability-experiment-py-bootstrap`, `agent-observability-experiment-analyzer`). Use when user says "run the eval pipeline", "go from traces to evals", "bootstrap evals end to end", "classify then RCA then bootstrap", "build an eval set from scratch", "onboard me to datasets and experiments", "walk me through experiments", "I have an ml_app, now what", "Agent Observability onboarding", "guided experiment setup", "from traces to experiments", or wants a deterministic, narrated tour from production data through evaluators, datasets, and experiments. Stop early with `--stop-after <phase>` to short-circuit at evaluators or dataset, or resume mid-flow with `--start-at <phase>`.

Backend

Detection — At the start of every invocation, before taking any action, determine which backend to use:

1. If the user passed --backend pup anywhere in their invocation → use pup mode immediately, regardless of whether MCP tools are present. Skip steps 2–4.
2. Check whether MCP tools are present in your active tool list. The canonical signal is whether mcp__datadog-llmo-mcp__search_llmobs_spans appears in your available tools.
3. If MCP tools are present → use MCP mode throughout. Call MCP tools exactly as named in the sub-skill workflow sections.
4. If MCP tools are absent → check whether pup is executable: run pup --version via Bash. A JSON response containing "version" confirms pup is available.
5. If pup responds → use pup mode throughout. Each sub-skill carries its own Tool Reference appendix with the full MCP→pup mapping.
6. If neither is available → stop and tell the user:

   "Neither the Datadog MCP server nor the pup CLI is available. Connect the MCP server (claude mcp add --scope user --transport http datadog-llmo-mcp 'https://mcp.datadoghq.com/api/unstable/mcp-server/mcp?toolsets=llmobs') or install pup."

--backend pup is accepted anywhere in the invocation arguments. Strip it from args before passing to sub-skills, but carry the pup-mode decision forward — every sub-skill must also operate in pup mode for the entire pipeline run.

Sub-skill backend propagation: The backend detected at startup applies to all sub-skills invoked across the six phases. Do not re-detect per phase. Announce once at startup:

• MCP mode: "(Running in MCP mode — all features available.)"
• pup mode: "(Running in pup mode — pup commands used throughout. All features available.)"

Invocation ID: At the very start of each invocation, before any MCP tool call, generate an 8-character hex invocation ID (e.g., 3a9f1c2b). Keep it constant for the entire invocation.

Intent tagging: On every MCP tool call, prefix telemetry.intent with skill:agent-observability-eval-pipeline[<inv_id>] — followed by a description of why the tool is being called. On the first MCP tool call only, use skill:agent-observability-eval-pipeline:start[<inv_id>] — instead (note the :start suffix). Example first call: skill:agent-observability-eval-pipeline:start[3a9f1c2b] — Precheck: verify ml_app has traces in the last 7 days

---

Agent Observability Eval Pipeline — Classify → RCA → Eval Bootstrap → Dataset → Experiment → Analyze

A deterministic, six-phase guided pipeline for an already-instrumented ml_app owner. Each phase has the same envelope — a banner that names the entity being produced, an explanation of its purpose, the action (a sub-skill call or a small executable step), and a checkpoint. You always know where you are.

[Precheck] verify ml_app, project, backend, credentials, output dir
   ↓
[Phase 1: Classify ml_app traces]        entity: ml_app, trace, span
   ↓
[Phase 2: Root cause analysis]           entity: failure mode, root cause
   ↓
[Phase 3: Bootstrap evaluators]          entity: evaluator, LLM judge
   ↓                                     (stop here with --stop-after eval-bootstrap
   ↓                                      for the classic eval-pipeline behavior)
[Phase 4: Create + publish dataset]      entity: dataset record, published dataset
   ↓                                     (executes: LLMObs.create_dataset)
[Phase 5: Generate + run experiment]     entity: experiment, task, evaluator, run
   ↓                                     (executes: python <generated_file>)
   ↓                                     (in-phase review beat before run)
[Phase 6: Analyze experiment]            entity: metric, comparison, recommendation

This skill is pure orchestration plus pedagogy — no new analytical logic. The work happens inside the sub-skills (agent-observability-session-classify, agent-observability-trace-rca, agent-observability-eval-bootstrap, agent-observability-experiment-py-bootstrap, agent-observability-experiment-analyzer). What this skill adds is the deterministic envelope: every phase has the same shape, the same checkpoint contract, and the same entity-explanation banner — so the user gets a consistent, narrated experience regardless of how they phrased the original request.

Usage

/agent-observability-eval-pipeline <ml_app> [--project-name <name>] [--timeframe <window>] [--trace-limit <N>]
                                [--format py|ipynb] [--evaluator-style function|class|remote]
                                [--offline-evaluators | --online-evaluators | --data-only]
                                [--start-at classify|rca|eval-bootstrap|dataset|experiment|analyze]
                                [--stop-after classify|rca|eval-bootstrap|dataset|experiment|analyze]
                                [--classification-summary <path>] [--rca-report <path>]
                                [--dataset-file <path>] [--dataset-name <name>]
                                [--experiment-file <path>] [--experiment-id <uuid> | --experiment-url <url>]
                                [--app-root <path>] [--env-file <path>] [--output-dir <dir>]
                                [--backend pup]

Arguments: $ARGUMENTS

Inputs

Input	Required	Default	Description
ml_app	Yes	—	The instrumented LLM app to onboard / evaluate against. The precheck verifies it has recent traces.
--project-name	No	derived from pyproject.toml / setup.cfg / setup.py / package.json / cwd (same order as agent-observability-experiment-py-bootstrap); falls back to experiment-sdk-default	The Datadog project the pipeline writes datasets and experiments into. The SDK lazily creates the project on first use via LLMObs.enable(project_name=...). Surface this in the Precheck so the user can confirm before anything is created.
--timeframe	No	now-7d	Lookback window for Phase 1 classification and Phase 4 dataset sampling.
--trace-limit	No	20	Sampling cap for Phase 4. Phase 1 internally uses min(20, --trace-limit) for the classification sample.
--format	No	py	Passed to agent-observability-experiment-py-bootstrap in Phase 5: py (script) or ipynb (Jupyter notebook).
--evaluator-style	No	function	Passed to agent-observability-eval-bootstrap (Phase 3) and agent-observability-experiment-py-bootstrap (Phase 5): function, class, or remote.
--offline-evaluators	No	on (default)	Phase 3: emit a Python SDK evaluator suite (BaseEvaluator / LLMJudge classes) that runs inside an experiment against a dataset. Maps internally to agent-observability-eval-bootstrap sdk_code mode.
--online-evaluators	No	off	Phase 3: publish online LLM-judge evaluators directly to Datadog (created as disabled drafts; enable in the UI). Online evaluators run on production spans as they're emitted. Maps internally to agent-observability-eval-bootstrap publish mode (was --publish).
--data-only	No	off	Phase 3: emit a local data blob only — no executable evaluator code or online publish. At Phase 3 entry the skill prompts the user to pick one of: (a) a DatasetRecordRaw[] JSON suitable for experiment use (maps internally to agent-observability-eval-bootstrap --emit-dataset), or (b) a framework-agnostic JSON evaluator spec for local analysis (maps internally to agent-observability-eval-bootstrap data_only mode).
--stop-after <phase>	No	analyze (run everything)	Stop after the named phase completes. classify = Phase 1 only. rca = through Phase 2. eval-bootstrap = through Phase 3 (matches the classic eval-pipeline). dataset = through Phase 4 (dataset created + published). experiment = through Phase 5 (experiment generated + run). analyze = all six phases (default).
--start-at <phase>	No	classify (start at the top)	Skip earlier phases and start at the named phase. Same vocabulary as --stop-after. The skill auto-loads any required prior-phase artifacts from <output-dir>/state/ (see "State persistence and entry/exit" section). For phases that need an artifact the auto-load can't find, supply it via one of the override flags below. Combinable with --stop-after to run a contiguous slice of the pipeline.
--classification-summary <path>	No	auto-loaded from <output-dir>/state/01-classification.md if --start-at rca or later	Override the Phase 1 output that Phase 2 consumes. Useful when the prior state file is missing or you want to point at a hand-edited version.
--rca-report <path>	No	auto-loaded from <output-dir>/state/02-rca-report.md if --start-at eval-bootstrap or later	Override the Phase 2 output that Phase 3 consumes.
--dataset-file <path>	No	auto-loaded from <output-dir>/state/04-published-dataset.json's dataset_file field (or the most recent <output-dir>/dataset_<ml_app>_*.json)	The local DatasetRecordRaw[] JSON. Used by Phase 4's publish sub-step when re-publishing without re-sampling.
--dataset-name <name>	No	auto-loaded from <output-dir>/state/04-published-dataset.json if --start-at experiment	The name of a published Datadog dataset that Phase 5 wires the experiment to.
--experiment-file <path>	No	auto-loaded from <output-dir>/state/05-experiment-run.json's experiment_file field if --start-at experiment and the file already exists	The generated experiment file. When present, Phase 5 skips the codegen sub-step (5a) and goes straight to the review beat (5b) → run (5c).
--experiment-id <uuid>	No	auto-loaded from <output-dir>/state/05-experiment-run.json if --start-at analyze	The Datadog experiment ID Phase 6 analyzes. Mutually exclusive with --experiment-url.
--experiment-url <url>	No	auto-loaded as above	Alternative to --experiment-id. The skill parses the trailing UUID out of the URL.
--app-root	No	resolved from cwd / pyproject.toml etc.	Restricts agent-observability-experiment-py-bootstrap's task-function introspection to this directory tree.
--env-file	No	none (auto-discovery walks standard locations)	Explicit .env path for credential loading. Surfaced in the Precheck and baked into the generated experiment as ENV_FILE_OVERRIDE.
--output-dir	No	./experiments	Where the dataset JSON, publish script, and generated experiment file are written.
--backend	No	auto-detect	pup forces pup mode regardless of MCP availability.

If ml_app is not provided, ask the user before proceeding. The three evaluator-output flags (--offline-evaluators, --online-evaluators, --data-only) are mutually exclusive — error out if more than one is set. If none are set, --offline-evaluators is the default. The legacy flag names --publish and --sdk-code are still accepted as aliases for backward compatibility but map to the new names in all output.

---

Precheck

Before Phase 1, run a single short verification pass — do not announce a "Phase" banner for this; it's plumbing. Output a one-block precheck summary, then move directly to Phase 1.

1. Backend — already detected at the top of this skill. Note the chosen backend in the precheck output so the user can confirm.

2. ml_app has recent traces — call search_llmobs_spans(query="@ml_app:\"<ml_app>\"", root_spans_only=true, limit=1, from="<timeframe>") (MCP) or the pup equivalent. If the result is empty, stop and tell the user the precheck failed — there is nothing to evaluate against — and suggest widening --timeframe or confirming the ml_app name.

3. Resolve project_name — if --project-name <name> was supplied, use it verbatim. Otherwise derive using the same resolution order as agent-observability-experiment-py-bootstrap (Workflow step 1): pyproject.toml → setup.cfg → setup.py → package.json → cwd basename (slugified). Final value is experiment-<service-name>; fall back to experiment-sdk-default if nothing resolves and emit a warning telling the user to set --project-name explicitly.

   Project creation semantics: the project is created lazily by the Datadog SDK the first time LLMObs.enable(project_name=...) is called against the org (in Phase 4's publish script, and again in Phase 5's generated experiment). The user does not need to pre-create anything in the UI. Surface the chosen project name in the Precheck output so the user can override before Phase 4 if it isn't what they wanted.

4. Ensure --output-dir and <output-dir>/state/ exist — mkdir -p <output-dir>/state via Bash. Cheap. The state/ subdirectory is where phase outputs get persisted (see "State persistence and entry/exit" below).

5. Resolve credentials. Walk the discovery order below to find Datadog credentials before Phase 4 needs them — failing late at the publish step is bad UX. Read-only at this stage: do NOT write any new files. Do NOT print secret values to the user; only report which file was loaded and which keys were resolved.

   Discovery order (first hit per variable wins; shell env vars always override files):

   1. --env-file <path> override if supplied — always tried first.
   2. Current shell environment (os.environ) — already-exported DD_API_KEY / DD_APPLICATION_KEY / DD_APP_KEY / DD_SITE take precedence over file values. If all required keys are already present, skip file loading entirely.
   3. <output-dir>/.env — if the user previously ran the skill and dropped a .env next to past artifacts, prefer that.
   4. <app-root>/.env — the resolved pyproject.toml / setup.cfg / setup.py / package.json directory (or cwd if none).
   5. <app-root>/.env.local — git-ignored local override convention.
   6. <cwd>/.env — fallback if cwd differs from app-root.
   7. Parent walk: from cwd, walk up directory by directory looking for .env until reaching / or the user's home directory. Stop at the first hit.
   8. ~/.datadog/credentials — Datadog's well-known per-user credentials file, if present.

   For each file checked, parse line-by-line: skip blanks / comment lines (#) / malformed lines (no =). Strip a leading export if present (so .envrc-style files work). Split on the first =. Strip surrounding quotes on the value. Only set a variable that is not already in os.environ — never overwrite the shell.

   Required keys: DD_API_KEY AND (DD_APPLICATION_KEY OR DD_APP_KEY). DD_SITE is optional (defaults to datadoghq.com). Provider keys (OPENAI_API_KEY, ANTHROPIC_API_KEY, etc.) are validated later in Phases 6/7 against the introspected task — not here.

   If all required keys resolved — record which file(s) were loaded and emit a single-line summary in the Precheck block. Continue.

   If required keys NOT found after walking every location — stop and prompt the user with a clear, actionable message:

   "Datadog credentials were not found in your shell env or any discovered .env file. Two options before continuing:

   • Export in your shell: export DD_API_KEY=… and export DD_APPLICATION_KEY=… (also DD_SITE=… if non-default), then re-invoke this skill.
   • Drop a .env at <app-root>/.env with DD_API_KEY=… and DD_APPLICATION_KEY=… on separate lines, then re-invoke.

   Make sure .env is in your .gitignore before committing."

   Do not offer to create the .env file for the user — secrets-on-disk decisions belong to the user, not the skill.

Output the precheck summary, then start Phase 1:

## Precheck

- Backend: <MCP | pup>
- ml_app `<ml_app>` has traces in <timeframe>: yes (<sample_count> root spans found)
- Project name: `<project_name>` (created lazily on first LLMObs.enable() call in Phase 4)
- Output dir: `<output-dir>` (created)
- Credentials: <one of:
    "loaded from shell env (DD_API_KEY, DD_APPLICATION_KEY, DD_SITE)"
  | "loaded from <relative path to .env file> (DD_API_KEY, DD_APPLICATION_KEY[, DD_SITE])"
  | "shell env + <relative path>: keys resolved from both (shell overrode file for <list>)"
  >
- Stop-after: <phase from --stop-after, default `analyze`>

Starting Phase 1 of 6.

The exact list of keys in the credentials parenthetical reflects what was actually discovered (so the user can verify nothing surprising was loaded). Never print the values.

---

Phase Template

Every phase below uses this exact template. Do not deviate — the deterministic envelope is what makes the pipeline experience consistent across invocations.

## Phase N of 6: <Title>

**You are here.** Phase N of 6 — <one-line position summary>.

**What this phase produces**: <Entity name>
**What a <entity> is**: <2-3 sentence definition tailored to this phase>
**Why it matters**: <1 sentence on why the user needs this>

→ Action: <invoke <sub-skill> | execute <script>>

<full sub-skill output OR execution log reproduced here — do NOT summarize or truncate>

<after the action completes successfully, Write the phase output to
`<output-dir>/state/0N-<name>.{md,json}` per the State persistence contract — see
"State persistence and entry/exit" section. This happens BEFORE the checkpoint
so the file is on disk even if the user types `stop` next.>

---

### Checkpoint <N>

<concise summary of what was produced, where it lives (path / Datadog URL), and any caveats>

Before I continue to Phase N+1 (<next title>):
- <2–3 phase-specific review prompts the user can answer>

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Never auto-advance. Always pause at the checkpoint and wait for explicit user input. The whole point of this skill is determinism — that includes determinism over when the user moves on.

If the current phase matches the value of --stop-after, replace the checkpoint prompt with a Stop summary (see "Stop-after handling" at the bottom of this file).

---

Phase 1: Classify ml_app traces

Entity: ml_app, trace, span.

Pedagogy banner (use verbatim, adapted only to the actual ml_app name):

What an ml_app is: a logical LLM application — a name you tag spans with when instrumenting (ml_app=<name>). It groups all production traces and evaluator runs that belong to the same product surface. Every dataset, experiment, and evaluator you create later targets this scope.

What a trace is: one end-to-end execution of your ml_app — typically the agent loop for a single user request, made up of one or more spans (LLM calls, tool calls, retrievals).

Why this phase matters: before you root-cause failures (Phase 2), bootstrap evaluators (Phase 3), or curate a dataset (Phase 4), you want a quick read on what your app actually does in production and where its current failure modes are. Classification gives you that signal in one pass.

Trace pool preview (MANDATORY). Before invoking the sub-skill, build and surface a Datadog Traces UI link that opens the exact set of root spans Phase 4 will sample from. This lets the user eyeball the pool, spot outliers, or adjust --timeframe before any classification work runs. The link must match the filter that agent-observability-eval-bootstrap --emit-dataset uses in Phase 4 (see agent-observability/agent-observability-eval-bootstrap/SKILL.md → Phase 3D → Sampling): @ml_app:"<ml_app>" @status:ok, root spans only.

URL construction rules:

1. Host: prepend app. to DD_SITE. If DD_SITE is unset, default to app.datadoghq.com.
   • datadoghq.com → app.datadoghq.com
   • datadoghq.eu → app.datadoghq.eu
   • us3.datadoghq.com → app.us3.datadoghq.com
   • us5.datadoghq.com → app.us5.datadoghq.com
   • ap1.datadoghq.com → app.ap1.datadoghq.com
   • ap2.datadoghq.com → app.ap2.datadoghq.com
   • datad0g.com → app.datad0g.com (staging)
2. Path: /llm/traces (the Agent Observability Traces explorer).
3. Query string: URL-encode @ml_app:"<ml_app>" @status:ok @parent_id:undefined and bind to query=.
4. Time window: convert --timeframe to absolute epoch milliseconds (now - <duration in ms> for the start, now for the end) and bind to start= / end=.
5. Optional: append &paused=true so the UI does not live-stream the result on open.

Surface the link immediately before the Action block:

**Trace pool being analyzed** ({timeframe}, filter `@ml_app:"<ml_app>" @status:ok`, root spans only):

  <full URL>

Phase 1 will classify the first {min(20, trace-limit)} of these for orientation. Phase 4 will sample up to {trace-limit} from the same pool for the dataset. Click through if you want to see the pool before either runs, or adjust `--timeframe` and re-invoke if the window looks off.

Action: Follow the agent-observability-session-classify skill in ml_app mode, using:

• ml_app = the provided ml_app
• timeframe = the provided timeframe
• sample_limit = min(20, trace-limit) — keep this fast; Phase 4 will do the bigger sample

Run the complete ml_app mode workflow as defined in that skill (Steps M1 through M3). Output the full classification output (all compact per-unit blocks plus the final # Session Classification Summary) — do not summarize or truncate. Downstream Phase 2's RCA depends on the full text being in context.

Checkpoint 1

After the # Session Classification Summary is output, present:

## Phase 1 complete — you've seen what `<ml_app>` does in production

[verdict distribution table from session-classify]
[failure mode frequency table from session-classify]

**Trace pool for Phase 4's dataset sample**: <full URL from the Trace pool preview above>
(same filter / same timeframe — open it now if you want to scan for traces you'd rather exclude)

Next up — Phase 2 will diagnose *why* the failing traces are failing.

Before I continue:
- Do these failure patterns look right?
- Any traces you'd like to exclude from the dataset sample in Phase 4? (Paste trace IDs from the link above and I'll drop them.)
- Any quality dimension you already know you want to measure later?

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Wait for explicit user confirmation. If the user excludes specific traces, mark them as "excluded by user" — drop them from Phase 2's failure bucket and from Phase 4's sampling. Do NOT re-classify.

---

Phase 2: Root cause analysis

Entity: failure mode, root cause.

Pedagogy banner:

What a failure mode is: a recurring pattern in how your app fails — e.g. "the model hallucinates citation URLs", "the agent forgets state across tool calls", "the retrieval returns irrelevant chunks". Each failure mode has one or more root causes (system prompt deficiency, tool gap, retrieval miss, etc.).

Why this phase matters: an evaluator that scores generic "is this response good?" misses the specific things going wrong in your app. RCA lets Phase 3 propose evaluators that target your actual failure modes — sharper signal, fewer false alarms.

Action: Follow the agent-observability-trace-rca skill.

The # Session Classification Summary from Phase 1 is in context. The skill detects it automatically via its Phase 0 Step 0S check and enters the "from classifications" path — it extracts the failure bucket, presents the Classification Overview, and proceeds directly to Phase 2 (open coding) without running its own Phase 1 span search.

Run the full workflow through Phase 6 (the compiled RCA report). Output the full RCA report — do not summarize. The full report must be in context for Phase 3's detection to work.

Checkpoint 2

## Phase 2 complete — root causes identified

[the Phase 6 RCA report is above]

Next up — Phase 3 will bootstrap evaluators that target these failure modes.

Before I continue:
- Do these root causes look accurate?
- Any failure modes to add, remove, or reframe?
- Which root causes should the evaluators target? (Default: all of them.)

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Wait for explicit user confirmation. If the user adjusts the taxonomy, incorporate the changes before continuing.

---

Phase 3: Bootstrap evaluators

Entity: evaluator, LLM judge.

Pedagogy banner:

What an evaluator is: a function that grades one record's output. Returns bool / float / a structured EvaluatorResult. Two flavors: code evaluators (deterministic checks — JSON validity, regex match, length, custom Python) and LLM-as-judge evaluators (a model graded against a rubric — e.g. "is this response grounded in the retrieved documents?").

Operating modes (mutually exclusive; default is --offline-evaluators):

• --offline-evaluators (default): emit a Python SDK evaluator suite (BaseEvaluator / LLMJudge classes) that runs inside an experiment against a dataset. Use this when you'll run experiments locally.
• --online-evaluators: publish LLM-judge evaluators to Datadog as disabled drafts. They run on production spans as they're emitted once enabled. Use this when you want continuous evaluation in prod.
• --data-only: emit a local data blob only — no executable evaluator code or online publish. Prompts you to pick between a dataset for experiment use or a local analysis blob (see "Operating mode resolution" below).

Why this phase matters: evaluators are the contract between "this output looks fine" and "this output meets our quality bar." The bootstrapped suite is grounded in the failure taxonomy from Phase 2 — sharper than generic evaluators you'd otherwise hand-write.

Action: Follow the agent-observability-eval-bootstrap skill.

The RCA report from Phase 2 is in context. The skill detects the ## Failure Taxonomy heading automatically and enters its "from RCA" path in Phase 0.

Operating mode resolution

Before invoking the sub-skill, resolve the operating mode:

1. --offline-evaluators (default) → call agent-observability-eval-bootstrap with no mode flag (its sdk_code default).

2. --online-evaluators → call agent-observability-eval-bootstrap --publish.

3. --data-only → prompt the user via AskUserQuestion:

   "You picked --data-only for Phase 3. What kind of local data blob do you want?

   • Dataset for experiment use — a DatasetRecordRaw[] JSON suitable for LLMObs.create_dataset(records=...). Useful when you want to seed an experiment with the records this skill samples. (Internally calls agent-observability-eval-bootstrap --emit-dataset <path>.)
   • Local blob for analysis — a framework-agnostic JSON evaluator spec describing what evaluators would be generated, without emitting Python code. Useful for inspecting evaluator coverage without running anything. (Internally calls agent-observability-eval-bootstrap --data-only.)"

   If the user picks "Dataset for experiment use" and the pipeline is running through Phase 4 (i.e. --stop-after is not eval-bootstrap or earlier), tell the user that Phase 4's sample step will be skipped in favor of this Phase 3 output — the dataset they produce here will be the one Phase 4 publishes.

Pass --evaluator-style through unchanged.

The agent-observability-eval-bootstrap skill has its own mandatory proposal checkpoint (the evaluator suite proposal before code generation). Honor it — do not skip or auto-confirm it.

Checkpoint 3

## Phase 3 complete — evaluator suite ready

- Mode: `<offline-evaluators | online-evaluators | data-only (dataset-for-experiment) | data-only (analysis-blob)>`
- Output: `<path to .py / .json / dataset-record JSON / "published as drafts to Datadog">`
- Evaluators emitted: <list of names>
- Coverage: <one-liner: which failure-mode categories are now covered>

Next up — Phase 4 will sample production traces into a dataset you can run experiments against (using these evaluators or the placeholders the experiment template ships with).

If you only wanted evaluators (the classic eval-pipeline flow), this is the natural stopping point: re-invoke with `--stop-after eval-bootstrap` to formalize that as the exit.

Before I continue:
- Do the generated evaluators look right?
- Any to drop or rename before they're referenced in the experiment?

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Wait for explicit user confirmation. If --stop-after eval-bootstrap is set, this is where the pipeline ends — emit the Stop summary instead of the Checkpoint and exit.

---

Phase 4: Create and publish dataset

Entity: dataset, dataset record, published dataset (Datadog-side), dataset_name, version.

Pedagogy banner:

What a dataset is: a named collection of records that an experiment runs against. Each record has input_data (what the task receives) and optionally expected_output (what you expect back). Datasets live in Datadog under your project and have a version — every push that changes records produces a new version.

What a record is: a single (input_data, expected_output) pair, optionally with metadata and tags. One record = one experiment row.

What "publishing" means: pushing the local records to Datadog so the dataset becomes addressable by name across all subsequent experiments. After publish, anyone in your org (with access) can pull it with LLMObs.pull_dataset(dataset_name="…") — including the experiment code we generate in Phase 5.

Why this phase matters: experiments need a stable, addressable input set. Sampling production traces gives you a realistic starting dataset (the inputs your app actually sees), and publishing it under your project makes it the contract between dataset curation and the experiments that consume it.

This phase executes code on your machine (the publish step writes to Datadog via LLMObs.create_dataset(...)). The dataset-create step is read-only; the publish step is the one that changes state.

Action — two sub-steps, no intermediate checkpoint:

4a — Sample traces into a DatasetRecordRaw[] JSON. Follow the agent-observability-eval-bootstrap skill in --emit-dataset mode:

/eval-bootstrap <ml_app> --timeframe <timeframe> --trace-limit <trace-limit> --emit-dataset <output-dir>/dataset_<ml_app>_<YYYYMMDD>.json

This mode samples root spans, extracts (input_data, expected_output) pairs, applies a PII scrub, and writes the JSON. It does not propose or generate evaluators — the dataset is the sole artifact. See agent-observability/agent-observability-eval-bootstrap/SKILL.md → Phase 3D for the full spec.

If the user excluded specific traces in Checkpoint 1, pass that exclusion list along (sub-skill drops them during sampling — do NOT re-classify).

Reproduce the sub-skill's ## Generated Dataset summary verbatim.

Skip 4a if Phase 3 already produced a dataset. When the user picked --data-only with the "Dataset for experiment use" sub-mode in Phase 3, the Phase 3 state file (state/03-evaluators.json) has mode: data_only_dataset and an output_path pointing at the dataset JSON. In that case, skip sub-step 4a entirely and feed the Phase 3 output to 4b's publish helper directly. Surface a one-line note: "Reusing dataset from Phase 3 (<path>); skipping fresh sampling."

4b — Publish to Datadog. Immediately invoke the pre-shipped publish helper at <this-skill-dir>/scripts/publish_dataset.py via Bash. Do not inline the script content into this SKILL.md or re-write it from scratch — the helper is the source of truth for the publish flow (credential discovery, tag normalization, project creation, error handling). It accepts CLI args, so no placeholder substitution is needed.

python <skill-dir>/scripts/publish_dataset.py \
  --records <absolute path to JSON from 4a> \
  --dataset-name <chosen dataset_name, default <ml_app>_seed_<YYYYMMDD>> \
  --project-name <resolved project_name from Precheck> \
  [--env-file <path>]   # repeatable; takes precedence over auto-discovery

<skill-dir> resolves to wherever the skill is installed (e.g., ~/.claude/skills/agent-observability-eval-pipeline/). The script prints either:

• Loaded credentials from: <file paths> (if any .env files contributed values), then
• OK dataset_name=<name> record_count=<N> url=<url> (on success), or
• ERROR: <message> on stderr with a non-zero exit (auth, missing keys, ddtrace import failure, etc.).

Notes for the orchestrator:

• Before invoking the publish helper, do an import-availability precheck: python -c "import ddtrace.llmobs" via Bash. If it fails, stop and tell the user:

  "ddtrace is not installed in the active Python environment. Run pip install 'ddtrace>=4.7' and re-invoke this skill (re-run from the top — Phases 1–3 outputs are idempotent)."

• LLMObs.enable(project_name=...) inside the script is where the --project-name from the Precheck actually materializes — the Datadog project is created lazily on first call.
• If the script prints a WARNING: line about tag normalization, surface it in Checkpoint 4 so the user knows their upstream dataset had malformed tags.
• If the script prints Loaded credentials from: ..., include that file path in Checkpoint 4.
• If the script exits non-zero with an auth error (401/403), surface the stderr and stop — do not retry. Tell the user the most likely cause is a stale .env value, and that export DD_API_KEY=... DD_APPLICATION_KEY=... in their shell takes precedence and can be used to override.
• On success, capture the printed dataset_name and url and carry them into Phase 5. Write both to the Phase 4 state file (see State persistence section).

Why no intermediate checkpoint between 4a and 4b? The local JSON is auto-extracted from traces and goes straight into LLMObs.create_dataset(records=...) — there is essentially no editable surface between the two steps in the common case. Users who want to inspect or edit the JSON before publish should run eval-bootstrap --emit-dataset standalone, edit the JSON, then re-enter this pipeline with --start-at experiment --dataset-name <name> once they've published manually.

Checkpoint 4

## Phase 4 complete — dataset created and published

- Local file: `<path>` (kept for inspection / re-publish)
- Records emitted: <N> (skipped: <M> with no usable output)
- PII redactions: <P>
- Tag normalizations: <T>
- Published as: `<dataset_name>` in project `<project_name>` <(created if it did not exist)>
- Datadog UI: <url or "open Agent Observability → Datasets to confirm">
- Caveat: `expected_output` is the **current production behavior baseline**, not ground truth. Treat the dataset as a regression-style baseline before promoting it to a labelled gold set.

Next up — Phase 5 will generate a Python experiment script that pulls `<dataset_name>` and runs your task code (auto-discovered) against it.

Before I continue:
- Confirm you can see the dataset in the Datadog UI (Agent Observability → Datasets → search `<dataset_name>`)?
- Any second thoughts on the records (we can re-emit and re-publish before generating the experiment)?

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Wait for confirmation.

---

Phase 5: Generate and run experiment

Entity: experiment, task function, evaluator, experiment run, experiment.url, metric stream.

Pedagogy banner:

What an experiment is: a programmatic harness that, for each record in a dataset, calls a task function (your code under test — typically an LLM call), then runs one or more evaluators against the task's output. Datadog collects all those results into a single experiment view you can compare across runs.

What a task function is: a Python callable that receives one record's input_data and a config dict, and returns whatever your app would have returned for that input. The sub-skill introspects your project to find this function automatically — no # TODO(user) placeholder unless nothing was found.

What an evaluator is: covered in Phase 3 above. The generated experiment ships placeholder evaluators by default; if you ran Phase 3 with --evaluator-style remote, you can wire those names in here.

What experiment.url is: the deep link to the run in the Datadog Experiments UI. Phase 6 uses this to analyze results.

Why this phase matters: this is where your code actually executes against the dataset and produces measurements. Generation is the cheap part; running is what costs provider tokens and produces signal.

This phase executes code on your machine (Python file is run end-to-end after an in-phase review beat).

Action — three sub-steps with an in-phase review beat between codegen and run:

5a — Generate the experiment file. Follow the agent-observability-experiment-py-bootstrap skill:

/agent-observability-experiment-py-bootstrap \
  --dataset-name <dataset_name> \
  --project-name <project_name> \
  --format <format> \
  --evaluator-style <evaluator-style> \
  --app-root <app-root> \
  --env-file <env-file if set> \
  --output <output-dir>/experiment_<ml_app>_<YYYYMMDD>.<py|ipynb>

Reproduce the sub-skill's full output (including the generated SDK calls summary, the "Task function source" block, the credential discovery section, and the Next steps block) verbatim. Do not summarize. The "Task function source" block tells the user which module:function was auto-wired — that's load-bearing for the next sub-step.

5b — In-phase review beat (MANDATORY). After the sub-skill output, pause with a brief inline prompt (this is NOT a full checkpoint with a new banner — it's a single-line review beat inside Phase 5):

## Phase 5 — review the generated experiment before running

- File: `<path>`
- Wired to dataset: `<dataset_name>` (pulled at runtime via LLMObs.pull_dataset)
- Task function source: <line lifted from the sub-skill output — module:function, or "placeholder fallback">
- Evaluators: <2–3 evaluator names>

**Open the file and check three things before I run it:**
1. The wired `task_fn` (section 4) — confirm the sub-skill picked the right entry point. If it picked a helper or deprecated path, edit the import to point at the right function. If it fell back to a placeholder, replace it with a real call.
2. The placeholder evaluators (section 5) — these are starting points. If Phase 3 produced online evaluators via `--publish`, swap one of the placeholders for a `RemoteEvaluator(eval_name="...")`.
3. The `experiment.run(jobs=<N>)` parallelism (section 7) — defaults to 10; lower it if you're worried about rate limits.

Type **`run`** to execute the file as-is, **`edit`** to pause here so you can edit and re-run this skill, or **`stop`** to exit cleanly. State for Phase 4 and earlier is preserved.

Wait for the user's reply.

• If run: proceed to 5c.
• If edit: tell the user the file is at <path> and they can re-invoke this skill with --start-at experiment once they're satisfied. End the run cleanly. The generated file path is written to the state file so --start-at experiment can resume codegen-free (just re-run sub-step 5c).
• If stop: emit the Stop summary and end. State for completed phases (including the generated experiment file) is preserved on disk.
• Anything else: treat as adjustment / question. Reason about it, answer, then re-show the review prompt.

5c — Execute the file.

• For --format py: python <generated_path> via Bash. Stream output to the user.
• For --format ipynb: tell the user the generated file is a notebook and ask whether to (a) execute it via jupyter nbconvert --to notebook --execute --inplace <path> (requires jupyter installed), or (b) hand off — the user opens it in JupyterLab and runs cells manually. Default to (a) if jupyter is on PATH; otherwise (b).
• Capture the printed experiment.url from the run's stdout — the generated file always ends with print(experiment.url). If you can't find it, parse stdout for the substring https://app.datadoghq.com/llm/experiments/ (account for non-default DD_SITE hosts).
• If the run fails: do NOT retry automatically. Surface the full traceback, identify the failure category (auth, missing dep, dataset not found, task function raised, evaluator raised) in a one-line diagnosis, and ask the user whether to fix and re-run.

Checkpoint 5

## Phase 5 complete — experiment generated and run

- File: `<path>`
- Experiment URL: <experiment.url>
- Records processed: <N>
- Duration: <wall-clock seconds>
- Task function: <module:function>
- Evaluator score summary (from stdout, if printed): <table or "open the UI">

Next up — Phase 6 will pull the experiment results back from Datadog and produce an analysis report (struggling metrics, qualitative examples, root-cause hypotheses).

Before I continue:
- Take a look at the experiment in the UI (link above). Do the per-record scores roughly match your expectations?
- Any specific question you want Phase 6 to focus on? (Optional — leaving it open runs an exploratory analysis.)

Type `continue` to proceed, `stop` to exit cleanly (state is saved), `redo` to re-run this phase, or give me adjustments.

Wait for confirmation. If the user provides a focus question, carry it to Phase 6 as the analyzer's question argument.

---

Phase 6: Analyze experiment

Entity: experiment metric, segment comparison, recommendation.

Pedagogy banner:

What an experiment metric is: a per-record score produced by one of your evaluators, aggregated into a pass-rate / score-distribution across the dataset. The Datadog Experiments UI shows these as columns and lets you slice by metadata fields you attached to each record.

What a recommendation looks like: based on which metrics underperformed and on patterns in the failing records, the analyzer surfaces hypotheses for what to change next (system prompt, retrieval, task code, the dataset itself, or the evaluator).

Why this phase matters: this closes the loop. You started by looking at production behavior; you now have an evidence-backed read on where the experiment exposes gaps and what to try next.

Action: Follow the agent-observability-experiment-analyzer skill in single-exploratory (or single-Q&A if the user supplied a focus question in Checkpoint 7):

/agent-observability-experiment-analyzer <experiment_id_from_url> [<focus question if any>] --output agent

Extract the <experiment_id> from the URL captured in Phase 5 (the trailing UUID after /llm/experiments/).

Reproduce the analyzer's full report verbatim.

Final Summary

After the analyzer report, emit the closing summary — this replaces the per-phase checkpoint:

# Agent Observability Eval Pipeline complete

**ml_app**: `<ml_app>` | **Project**: `<project_name>` | **Timeframe**: <timeframe>

| Phase | Output |
|---|---|
| 1. Classify ml_app | <N> traces classified (<F> failures) |
| 2. Root cause analysis | <K> failure modes, <M> root causes |
| 3. Bootstrap evaluators | <J> evaluators (`<offline-evaluators | online-evaluators | data-only>`) → `<path>` (or "<N> drafts published to Datadog") |
| 4. Create + publish dataset | <K> records → `<dataset_path>`, published as `<dataset_name>` (v1) in project `<project_name>` |
| 5. Generate + run experiment | `<experiment_file_path>` → <experiment.url> (<N> records, <duration>s) |
| 6. Analyze experiment | <2–3 bullet headline findings from the analyzer> |

## What you learned

- The five core entities you touched: **ml_app**, **failure mode**, **evaluator**, **dataset**, **experiment**. Each has a dedicated docs page — see Datadog Documentation below.
- The loop you can now repeat: **edit dataset → re-run experiment → compare in the UI**. Pull-by-name + auto-versioning makes the loop cheap.
- The reusable artifacts you produced: an evaluator suite (Phase 3), a published dataset (Phase 4), and an experiment script (Phase 5). All three survive beyond this pipeline run.

## Recommended next steps

1. Open the experiment in the Datadog UI: <experiment.url>
2. Replace the placeholder evaluators in `<experiment_file_path>` with the ones bootstrapped in Phase 3 (swap the function refs / `RemoteEvaluator` names).
3. Re-run the experiment after every meaningful change to your task code. Datadog will keep the run history under the same project.
4. If you published draft evaluators via `--online-evaluators`, review and enable them in the UI (Agent Observability → Evaluations).

## Datadog Documentation

- Agent Observability overview: <https://docs.datadoghq.com/llm_observability/>
- Datasets: <https://docs.datadoghq.com/llm_observability/experiments/datasets_and_experiments/>
- Experiments: <https://docs.datadoghq.com/llm_observability/experiments/>
- Evaluations: <https://docs.datadoghq.com/llm_observability/evaluations/>
- Python SDK reference: <https://docs.datadoghq.com/llm_observability/instrumentation/sdk/>

---

Stop-after handling

--stop-after <phase> lets the user exit cleanly before the full six-phase pipeline completes. Valid values map to the phase numbers:

Value	Stop after	Use case
classify	Phase 1	"I just want to see what's going on in my ml_app."
rca	Phase 2	"I want to understand failure modes — I'll write evaluators myself."
eval-bootstrap	Phase 3	Matches the classic agent-observability-eval-pipeline behavior. Use for "I want evaluators, not experiments."
dataset	Phase 4	"I want the dataset created and published, but I'll generate / run / analyze the experiment myself."
experiment	Phase 5	"Generate and run the experiment; I'll analyze the results myself."
analyze	Phase 6 (default)	Full pipeline.

When the current phase matches the stop value, replace the Checkpoint at the bottom of that phase with a Stop summary:

## Pipeline stopped — `--stop-after <phase>`

Completed phases: <list 1..stop>
Skipped: <list stop+1..6 with one-line descriptions>

Artifacts produced: <list with paths / URLs>

Re-invoke with a later `--stop-after` (or no flag for the full run) when you're ready to continue. State from completed phases is idempotent — re-running them will just re-derive the same outputs.

This makes --stop-after eval-bootstrap a drop-in replacement for the old agent-observability-eval-pipeline behavior without losing the orchestrator's pedagogy banners.

---

State persistence and entry/exit

The pipeline persists every phase's primary output to <output-dir>/state/ so that subsequent invocations can resume mid-flow with --start-at <phase> instead of starting from Phase 1 every time.

State file contract

After every successful phase completion (i.e. after the user types continue past its checkpoint, OR before the Stop summary if --stop-after matches), write the phase output to <output-dir>/state/0N-<name>.{md,json}. Schema is fixed per phase:

Phase	State file	Schema
1 classify	state/01-classification.md	The full # Session Classification Summary block plus all per-unit compact blocks, verbatim from agent-observability-session-classify. Markdown.
2 rca	state/02-rca-report.md	The full Phase 6 RCA report from agent-observability-trace-rca, verbatim. Markdown.
3 eval-bootstrap	state/03-evaluators.json	{"mode": "offline_evaluators|online_evaluators|data_only_dataset|data_only_analysis", "output_path": "<path>", "evaluator_names": [...], "ml_app": "<ml_app>", "generated_at": "<ISO 8601>"}. The actual evaluator code/JSON/dataset stays where the sub-skill wrote it. The data_only_dataset mode produces a DatasetRecordRaw[] JSON that Phase 4 then consumes directly.
4 dataset	state/04-published-dataset.json	{"dataset_file": "<path to local DatasetRecordRaw[] JSON>", "dataset_name": "<published name>", "project_name": "<name>", "version": <int>, "url": "<datadog url>", "record_count": <int>, "skipped_count": <int>, "pii_redactions": <int>, "tag_normalizations": <int>, "published_at": "<ISO 8601>"} — combines what was previously two state files (04-dataset.json and 05-published-dataset.json) because Phase 4 now creates and publishes in one step.
5 experiment	state/05-experiment-run.json	{"experiment_file": "<path>", "format": "py|ipynb", "dataset_name": "<name>", "task_source": "<module:function>|placeholder", "purpose": "<text>", "experiment_id": "<uuid>", "experiment_url": "<datadog url>", "records_processed": <int>, "duration_seconds": <float>, "generated_at": "<ISO 8601>", "ran_at": "<ISO 8601>"} — combines what was previously two state files (06-experiment.json and 07-experiment-run.json) because Phase 5 now generates and runs in one step. If the user halts at the in-phase review beat (5b) with edit, only the codegen fields are populated; re-entering with --start-at experiment reads the file path from here and resumes at 5c.
6 analyze	state/06-analysis.md	The full analyzer report from agent-observability-experiment-analyzer. Markdown.

<output-dir>/state/ should be created via mkdir -p at the top of the Precheck (alongside the existing <output-dir> creation). Never write state files outside this directory.

--start-at resolution

At the top of the run, after the Precheck, branch on --start-at:

1. If --start-at is not set or equals classify, proceed normally with Phase 1.

2. Otherwise, for every phase strictly before the start phase, load the state file corresponding to that phase. If an override flag was passed (--classification-summary, --rca-report, --dataset-file, --dataset-name, --experiment-file, --experiment-id, --experiment-url), it takes precedence over the state file.

3. If a required state file is missing AND no override flag was supplied, fail fast with a clear message:

   "Can't --start-at <phase> — Phase 's state file at <output-dir>/state/0(N-1)-<name>.{md,json} is missing and no --<prior-phase>-override <path> flag was supplied. Either re-run from an earlier phase or pass the override flag explicitly."

4. For each loaded state file or override, print a one-line "Loaded prior state: from " in the Precheck output so the user can see what's being reused.

5. Skip directly to the start phase. The first phase to actually run prints its full banner; the earlier phases get a one-line note in the Precheck.

The Precheck output gets an extra line at the bottom when --start-at is in effect:

- Resumed from: --start-at <phase> (loaded state for phases 1..N-1)

Mid-run exit at any checkpoint

Every Checkpoint accepts these inputs (case-insensitive, leading/trailing whitespace OK):

User types	Behavior
continue, c, go, yes, y, next, or just <Enter> with no text	Advance to the next phase.
stop, exit, done, quit, q, cancel	Emit the Stop summary here and end the run. Same shape as if --stop-after <current-phase> had been set from the top. State for completed phases is preserved on disk, so the user can --start-at <next-phase> later.
redo (optionally followed by adjustment notes like redo with --trace-limit 50)	Re-run the current phase only. Do not re-run earlier phases — their state on disk is unchanged. Apply any adjustment notes the user appended.
back (optionally followed by a phase name)	Move backward one phase (or to the named phase) and re-run from there. Discard state for the affected phases on disk so they're regenerated.
anything else	Treat as adjustment / question. Reason about it in context; if the user is asking a clarifying question, answer and re-show the checkpoint prompt. If the user is requesting a phase modification, apply it and re-run the phase.

The Phase Template's "Type 'continue' to proceed" line should be updated to:

Type continue to proceed, stop to exit cleanly (state is saved — you can resume with --start-at <next-phase> later), redo to re-run this phase, or give me adjustments.

Practical re-entry examples

# First-time, full run end-to-end
/agent-observability-eval-pipeline lux --project-name lux

# (user typed 'stop' at Checkpoint 4)
# Later, pick up where they left off:
/agent-observability-eval-pipeline lux --project-name lux --start-at experiment

# Already have a dataset published; want to scaffold + run an experiment around it
/agent-observability-eval-pipeline lux --project-name lux --start-at experiment --dataset-name lux_seed_v3

# Re-analyze a previous experiment without re-running it
/agent-observability-eval-pipeline lux --start-at analyze --experiment-id 8a3f9c2b-...

# Slice — just classify + RCA, leave the rest for later
/agent-observability-eval-pipeline lux --stop-after rca

# Continue from the slice above without redoing classify
/agent-observability-eval-pipeline lux --start-at eval-bootstrap --stop-after eval-bootstrap

--start-at and --stop-after compose freely. Internally, --start-at X --stop-after Y runs exactly phases X through Y inclusive (and the run is invalid if Y < X — error out at argument parse time).

---

Orchestration Rules

• Always run the precheck, even on re-invocations. It's cheap and it catches a stale ml_app argument, an expired auth token, or a typo in --project-name before you waste a sub-skill call.
• Always emit the precheck block. Even though it isn't a "phase", users have learned to look for it as the first output.
• Never auto-advance between phases. Every checkpoint waits for explicit user input. The recognized checkpoint vocabulary is continue / stop / redo / back plus free-text adjustments — see "State persistence and entry/exit → Mid-run exit at any checkpoint" for the full table.
• Persist phase output before showing the checkpoint. Every phase writes its primary output to <output-dir>/state/0N-<name>.{md,json} before the checkpoint prompt is rendered. This way stop at any point leaves a re-enterable artifact on disk — the user can resume later with --start-at <next-phase> and the skill will load the prior state without re-running anything.
• Honor --start-at precisely. When --start-at <phase> is set, load every prior phase's state file (or its override flag if supplied), print a one-line confirmation per loaded phase in the Precheck, and begin from the named phase. If a required state file is missing and no override was passed, fail fast — do not silently re-run the missing phase.
• Never truncate sub-skill output. The user is here to learn what the sub-skills do; if you summarize their output, you defeat the pedagogical purpose. Reproduce verbatim. Downstream phases also depend on the full text being in context (Phase 2 detects Phase 1's classification summary; Phase 3 detects Phase 2's failure taxonomy).
• The phase envelope is invariant. The banner ("You are here. Phase N of 6…"), the entity block, the action label, and the checkpoint header must appear identically across every phase. The content inside may differ; the envelope must not. This is the determinism the skill promises.
• Execute only at Phases 4 and 5. No other phase runs code on the user's machine. Phase 4 runs the publish script (writes the dataset to Datadog); Phase 5 runs the generated experiment file (calls provider APIs against the dataset). All other phases are read-only or write generated files to --output-dir. If a sub-skill output suggests the user should run something themselves, hand it off — don't quietly execute it.
• Phase 5 has a mandatory in-phase review beat. Between sub-step 5a (codegen) and 5c (execute), pause with the in-phase review prompt. Wait for the user to type run, edit, or stop. Never auto-run after codegen.
• One backend for the whole run. Detected at startup, propagated to all sub-skill calls. Do not re-detect mid-run.
• --project-name is sticky. Whatever the user picked at Precheck flows unchanged into Phases 4 and 5 and into the final summary. If the user changes their mind at Checkpoint 4, re-run Phase 4 (and only Phase 4) with the new name — do NOT silently rewrite earlier outputs.
• Phase re-entry: if the user types something like "redo phase 4 with --trace-limit 30", re-run that phase only (and clearly say so — "Re-running Phase 4 with the new trace limit. Phases 1–3 outputs are unchanged."). After it completes, fall through to Phase 5 just like a fresh run would.

---

What this skill does NOT do

This list exists so reviewers can spot scope creep:

• Does not instrument your app. Audience assumption: the user already has ml_app traces flowing into Datadog. If the precheck finds zero traces, the skill stops and points the user at the instrumentation docs — it does not attempt to bootstrap instrumentation.
• Does not push code or commit anything. All generated files land in <output-dir>; the user owns version control.
• Does not run any phase's code without an explicit checkpoint or review confirmation. Phase 4 advances from the dataset-create sub-step to the publish sub-step automatically (no user-editable surface between them), but Phase 5 pauses at the in-phase review beat between codegen and run — the user types run to proceed.
• Does not deeply modify your app. Phase 5's experiment file imports your task function; it does not refactor it. If you want prompt / model variants without editing your app, inline the call inside task_fn in the generated file.
• Does not auto-create .env files. Credential files are discovered, not generated — secrets-on-disk decisions belong to the user.

---

Tool Reference

This skill itself does almost no direct tool calls — the only direct calls are:

1. The precheck search_llmobs_spans (to confirm the ml_app has traces).
2. Bash for Phase 4 (running the publish script) and Phase 5 (running the generated experiment).
3. No Write for Phase 4's publish — the publish helper ships at scripts/publish_dataset.py alongside this SKILL.md; the orchestrator invokes it by path with CLI args. The skill does not generate the script on the fly.

Everything else routes through sub-skills, which carry their own MCP-to-pup mappings:

Sub-skill	When invoked	Where its tool reference lives
agent-observability-session-classify	Phase 1	agent-observability/agent-observability-session-classify/SKILL.md (Tool Reference appendix)
agent-observability-trace-rca	Phase 2	agent-observability/agent-observability-trace-rca/SKILL.md (Tool Reference appendix)
agent-observability-eval-bootstrap (offline-evaluators / online-evaluators / data-only)	Phase 3	agent-observability/agent-observability-eval-bootstrap/SKILL.md (Tool Reference appendix)
agent-observability-eval-bootstrap (--emit-dataset mode)	Phase 4 (sub-step 4a)	agent-observability/agent-observability-eval-bootstrap/SKILL.md (Phase 3D + Tool Reference appendix)
agent-observability-experiment-py-bootstrap	Phase 5 (sub-step 5a)	agent-observability/agent-observability-experiment-py-bootstrap/SKILL.md
agent-observability-experiment-analyzer	Phase 6	agent-observability/agent-observability-experiment-analyzer/SKILL.md (Tool Reference appendix)

Precheck search_llmobs_spans ↔ pup

MCP Tool	pup Command
search_llmobs_spans(query="@ml_app:\"<ml_app>\"", root_spans_only=true, limit=1, from="<timeframe>")	pup llm-obs spans search --query "@ml_app:\"<ml_app>\"" --root-spans-only --limit 1 --from <stripped-timeframe> --summary (strip the now- prefix from timeframe per the pup invocation rules above).

• MCP result parsing safety: Before writing any script (Python, jq, etc.) that iterates over or accesses fields in an MCP tool result, inspect the raw structure first — check type(result), top-level keys, and whether the payload is nested inside a content block (e.g. [{'type': 'text', 'text': '<json>'}]). Extract and json.loads() the inner payload if needed. Never assume MCP results are bare dicts or lists.